Chain sequence(s) |
A: MDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVAEKTKEQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQLGKNEEGAPQEGILEDMPVDPDNEAYEMPSEEGYQDYEPEA
input PDB |
Selected Chain(s) | A |
Distance of aggregation | 10 Å |
FoldX usage | Yes |
Dynamic mode | No |
Automated mutations | No |
Mutated residues | AP30A |
Energy difference between WT (input) and mutated protein (by FoldX) | 3.94817 kcal/mol
CAUTION: Your mutation/s can destabilize the protein structure |
Downloads | Download all the data |
Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00) [WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow to prevent this behavior) (00:00:00) [INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00) [INFO] runJob: Creating pdb object from: input.pdb (00:00:00) [INFO] FoldX: Starting FoldX energy minimalization (00:00:00) [INFO] FoldX: Building mutant model (00:01:33) [INFO] FoldX: Starting FoldX energy minimalization (00:01:33) [INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:02:27) [INFO] Main: Simulation completed successfully. (00:02:28) |
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
residue index | residue name | chain | Aggrescan3D score | mutation |
---|---|---|---|---|
residue index | residue name | chain | Aggrescan3D score | |
1 | M | A | 0.8612 | |
2 | D | A | 0.1300 | |
3 | V | A | 1.8630 | |
4 | F | A | 2.0393 | |
5 | M | A | 0.9362 | |
6 | K | A | -0.7654 | |
7 | G | A | -0.5641 | |
8 | L | A | -0.3217 | |
9 | S | A | -1.8636 | |
10 | K | A | -2.7826 | |
11 | A | A | -1.7057 | |
12 | K | A | -2.0154 | |
13 | E | A | -2.1919 | |
14 | G | A | -0.6913 | |
15 | V | A | 0.8991 | |
16 | V | A | 0.8291 | |
17 | A | A | -0.5653 | |
18 | A | A | -0.8578 | |
19 | A | A | -1.1194 | |
20 | E | A | -2.9564 | |
21 | K | A | -3.2059 | |
22 | T | A | -2.1234 | |
23 | K | A | -3.2970 | |
24 | Q | A | -3.1775 | |
25 | G | A | -1.9088 | |
26 | V | A | -0.3849 | |
27 | A | A | -1.5210 | |
28 | E | A | -2.6974 | |
29 | A | A | -1.6103 | |
30 | P | A | -1.8682 | mutated: AP30A |
31 | G | A | -2.8348 | |
32 | K | A | -3.3681 | |
33 | T | A | -2.4256 | |
34 | K | A | -3.0421 | |
35 | E | A | -2.2129 | |
36 | G | A | -0.7634 | |
37 | V | A | 1.3014 | |
38 | L | A | 1.5454 | |
39 | Y | A | 1.7464 | |
40 | V | A | 0.5324 | |
41 | G | A | -0.5317 | |
42 | S | A | -1.0960 | |
43 | K | A | -2.1535 | |
44 | T | A | -1.8888 | |
45 | K | A | -2.6714 | |
46 | E | A | -2.5858 | |
47 | G | A | -1.5646 | |
48 | V | A | -0.1986 | |
49 | V | A | 0.6181 | |
50 | H | A | -0.1590 | |
51 | G | A | 0.6947 | |
52 | V | A | 2.3613 | |
53 | A | A | 0.8787 | |
54 | T | A | 0.3822 | |
55 | V | A | 0.8243 | |
56 | A | A | -0.7842 | |
57 | E | A | -2.8797 | |
58 | K | A | -3.3262 | |
59 | T | A | -2.3817 | |
60 | K | A | -3.6165 | |
61 | E | A | -3.9589 | |
62 | Q | A | -2.7442 | |
63 | V | A | -0.2719 | |
64 | T | A | -1.4383 | |
65 | N | A | -1.4139 | |
66 | V | A | 0.7830 | |
67 | G | A | 0.5883 | |
68 | G | A | 0.7525 | |
69 | A | A | 1.6568 | |
70 | V | A | 3.1118 | |
71 | V | A | 3.0507 | |
72 | T | A | 1.9770 | |
73 | G | A | 2.1610 | |
74 | V | A | 2.9698 | |
75 | T | A | 1.4707 | |
76 | A | A | 0.9250 | |
77 | V | A | 1.3363 | |
78 | A | A | 0.3328 | |
79 | Q | A | -1.1657 | |
80 | K | A | -1.5472 | |
81 | T | A | -0.6800 | |
82 | V | A | 0.0318 | |
83 | E | A | -1.7263 | |
84 | G | A | -0.9857 | |
85 | A | A | 0.0925 | |
86 | G | A | -0.1845 | |
87 | S | A | 0.3192 | |
88 | I | A | 1.4854 | |
89 | A | A | 0.9223 | |
90 | A | A | 1.2356 | |
91 | A | A | 1.2745 | |
92 | T | A | 1.0202 | |
93 | G | A | 0.9125 | |
94 | F | A | 1.8629 | |
95 | V | A | 1.1823 | |
96 | K | A | -1.7131 | |
97 | K | A | -2.7409 | |
98 | D | A | -3.0747 | |
99 | Q | A | -2.2090 | |
100 | L | A | -0.6707 | |
101 | G | A | -1.6529 | |
102 | K | A | -2.9237 | |
103 | N | A | -3.5657 | |
104 | E | A | -3.8963 | |
105 | E | A | -3.7178 | |
106 | G | A | -2.2185 | |
107 | A | A | -1.7389 | |
108 | P | A | -1.9036 | |
109 | Q | A | -2.6294 | |
110 | E | A | -2.6409 | |
111 | G | A | -1.0182 | |
112 | I | A | 1.0765 | |
113 | L | A | 0.2774 | |
114 | E | A | -1.7030 | |
115 | D | A | -1.5650 | |
116 | M | A | 0.0012 | |
117 | P | A | -0.3664 | |
118 | V | A | -0.4560 | |
119 | D | A | -2.3910 | |
120 | P | A | -2.4490 | |
121 | D | A | -3.0173 | |
122 | N | A | -2.6283 | |
123 | E | A | -2.7886 | |
124 | A | A | -1.3308 | |
125 | Y | A | -0.3122 | |
126 | E | A | -1.9844 | |
127 | M | A | -0.8126 | |
128 | P | A | -1.2836 | |
129 | S | A | -1.6616 | |
130 | E | A | -2.7938 | |
131 | E | A | -2.7542 | |
132 | G | A | -2.0398 | |
133 | Y | A | -0.6750 | |
134 | Q | A | -1.8112 | |
135 | D | A | -2.2074 | |
136 | Y | A | -1.0889 | |
137 | E | A | -2.3465 | |
138 | P | A | -1.8129 | |
139 | E | A | -2.0778 | |
140 | A | A | -1.1262 |