Project name: Arg103

Status: done

Started: 2025-06-25 13:57:18
Settings
Chain sequence(s) H: EVQLLESGGGLVQPGGSLRLSCAASGFTFSSSQMSWFRQAPGKEREFISAVTLVSRTHYADSVKGRFTISRDNAKNTLYLQMNSLKPEDTAMYYCVARAAWGTDYREQGYRGQGTQVTVSS
input PDB
Selected Chain(s) H
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with H chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:06)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:07)
Show buried residues

Minimal score value
-3.6368
Maximal score value
1.4769
Average score
-0.8267
Total score value
-100.0278

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 E H -2.0184
2 V H -1.2298
3 Q H -1.4200
4 L H 0.0000
5 L H 0.6909
6 E H -0.0132
7 S H -0.6190
8 G H -1.2055
9 G H -0.6952
11 G H 0.2153
12 L H 1.1133
13 V H -0.0404
14 Q H -1.4009
15 P H -1.7519
16 G H -1.4996
17 G H -1.0431
18 S H -1.3516
19 L H -0.9961
20 R H -2.1596
21 L H 0.0000
22 S H -0.4494
23 C H 0.0000
24 A H -0.1543
25 A H 0.0000
26 S H -0.7353
27 G H -1.0253
28 F H -0.3743
29 T H -0.3127
30 F H 0.0000
35 S H -0.1833
36 S H 0.2311
37 S H 0.0000
38 Q H -0.0041
39 M H 0.0000
40 S H 0.0000
41 W H 0.0000
42 F H -0.2719
43 R H 0.0000
44 Q H -1.8734
45 A H -1.8514
46 P H -1.4453
47 G H -1.8116
48 K H -3.3440
49 E H -3.6368
50 R H -2.8818
51 E H -1.7310
52 F H -0.1785
53 I H 0.0000
54 S H 0.0000
55 A H 0.0000
56 V H 0.0000
57 T H 0.0603
58 L H 1.0464
59 V H 1.4769
63 S H -0.1840
64 R H -1.4447
65 T H -0.9692
66 H H -1.3151
67 Y H -0.9938
68 A H -1.3793
69 D H -2.6029
70 S H -1.8303
71 V H 0.0000
72 K H -2.7579
74 G H -1.8362
75 R H -1.8335
76 F H 0.0000
77 T H -1.0203
78 I H 0.0000
79 S H -0.7039
80 R H -0.9610
81 D H -1.6405
82 N H -1.9180
83 A H -1.5690
84 K H -2.3925
85 N H -1.9165
86 T H -1.0772
87 L H 0.0000
88 Y H -0.6029
89 L H 0.0000
90 Q H -1.4158
91 M H 0.0000
92 N H -1.6814
93 S H -1.4467
94 L H 0.0000
95 K H -2.6910
96 P H -2.0575
97 E H -2.4542
98 D H 0.0000
99 T H -0.8876
100 A H 0.0000
101 M H -0.4007
102 Y H 0.0000
103 Y H -0.4645
104 C H 0.0000
105 V H -0.5756
106 A H 0.0000
107 R H 0.0000
108 A H -0.5027
109 A H -0.5934
110 W H -0.6728
111 G H -0.8026
111A T H -1.0037
112A D H -1.9783
112 Y H -1.1680
113 R H -2.3545
114 E H -1.7819
115 Q H -1.7036
116 G H -1.1471
117 Y H -0.6456
118 R H -1.7499
119 G H 0.0000
120 Q H -1.3847
121 G H 0.0000
122 T H -0.5532
123 Q H -0.5946
124 V H 0.0000
125 T H -0.2515
126 V H 0.0000
127 S H -0.7466
128 S H -0.4949
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018