Project name: Nb_I_Hum

Status: done

Started: 2025-07-13 22:24:22
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Chain sequence(s) A: QVQLVESGGGLVQPGGSLRLSCAASGRTFSPYTWFRQAPGQGLEAVAIIGSDRSTDLDGDTRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAALTAKGYVFTDNEYDYWGQGTLVTVSS
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:09)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:10)
Show buried residues

Minimal score value
-3.0112
Maximal score value
2.2375
Average score
-0.7272
Total score value
-86.5344

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q A -1.8147
2 V A -1.5476
3 Q A -1.3786
4 L A 0.0000
5 V A 1.1182
6 E A 0.3663
7 S A -0.2431
8 G A -0.6376
9 G A 0.1079
10 G A 0.8132
11 L A 1.2954
12 V A 0.0000
13 Q A -1.4398
14 P A -1.7114
15 G A -1.4693
16 G A -1.0188
17 S A -1.2976
18 L A -1.0156
19 R A -2.0334
20 L A 0.0000
21 S A -0.4236
22 C A 0.0000
23 A A -0.1089
24 A A 0.0000
25 S A -1.4968
26 G A -2.0073
27 R A -2.4724
28 T A -1.3527
29 F A 0.0000
30 S A -1.0362
31 P A 0.0000
32 Y A 0.0000
33 T A 0.0000
34 W A 0.0000
35 F A 0.0000
36 R A -0.5214
37 Q A -0.9098
38 A A -1.1168
39 P A -1.1916
40 G A -1.2958
41 Q A -1.8995
42 G A -1.3187
43 L A -0.7575
44 E A -1.3780
45 A A -0.8137
46 V A 0.0000
47 A A 0.0000
48 I A -0.0093
49 I A 0.0000
50 G A -1.6194
51 S A -2.0833
52 D A -2.8725
53 R A -3.0112
54 S A -1.7297
55 T A -1.1723
56 D A -1.0037
57 L A -1.1449
58 D A -2.2433
59 G A -1.5960
60 D A -1.2804
61 T A -0.7782
62 R A -0.7199
63 F A 0.0000
64 T A -0.5651
65 I A 0.0000
66 S A -0.7852
67 R A -1.4595
68 D A -1.8527
69 N A -2.3131
70 S A -1.8845
71 K A -2.5054
72 N A -2.1292
73 T A 0.0000
74 L A 0.0000
75 Y A -0.6312
76 L A 0.0000
77 Q A -1.1969
78 M A 0.0000
79 N A -1.3984
80 S A -1.2252
81 L A 0.0000
82 R A -2.4850
83 A A -1.8251
84 E A -2.3068
85 D A 0.0000
86 T A -0.4852
87 A A 0.0000
88 V A 0.7755
89 Y A 0.0000
90 Y A 0.2576
91 C A 0.0000
92 A A 0.0000
93 A A 0.0000
94 L A 0.0000
95 T A -1.1571
96 A A -1.1078
97 K A -1.6142
98 G A -0.0068
99 Y A 1.7353
100 V A 2.2375
101 F A 0.6587
102 T A -0.7840
103 D A -1.9041
104 N A -2.6302
105 E A -2.5146
106 Y A 0.0000
107 D A -2.0285
108 Y A -0.6427
109 W A 0.0358
110 G A -0.0585
111 Q A -0.7016
112 G A 0.0721
113 T A 0.5865
114 L A 1.5728
115 V A 0.0000
116 T A 0.3125
117 V A 0.0000
118 S A -0.7861
119 S A -0.5227
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Laboratory of Theory of Biopolymers 2018