Project name: query_structure

Status: done

Started: 2026-03-16 21:43:43
Settings
Chain sequence(s) A: MLPAPKNLVVSRVTEDSARLSWTAPDAAFDSFNIAYWEPGIGGEAIALRVPGSERSYDLTGLKPGTEYKVWIHGVKGGASSPPLIARFTT
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:45)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:45)
Show buried residues

Minimal score value
-3.0932
Maximal score value
1.5655
Average score
-0.7149
Total score value
-64.3386

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A 1.0638
2 L A 0.4475
3 P A -0.2165
4 A A -0.5107
5 P A 0.0000
6 K A -2.0265
7 N A -1.1675
8 L A 0.1285
9 V A 0.9678
10 V A 0.0587
11 S A -0.6072
12 R A -2.0051
13 V A -1.0385
14 T A -1.8177
15 E A -3.0932
16 D A -2.8231
17 S A -2.0880
18 A A 0.0000
19 R A -1.1618
20 L A 0.0000
21 S A -0.3287
22 W A 0.0000
23 T A -1.2801
24 A A -1.4082
25 P A -1.4059
26 D A -2.2764
27 A A -1.4172
28 A A -1.1599
29 F A 0.0000
30 D A -2.4018
31 S A 0.0000
32 F A 0.0000
33 N A -0.8230
34 I A 0.0000
35 A A 0.2256
36 Y A 0.0000
37 W A -0.3792
38 E A -0.8959
39 P A -0.4880
40 G A 0.1555
41 I A 1.2474
42 G A -0.1306
43 G A -0.4675
44 E A -1.4589
45 A A -0.4718
46 I A 0.3811
47 A A -0.0267
48 L A -0.4334
49 R A -1.8160
50 V A 0.0000
51 P A -1.5371
52 G A 0.0000
53 S A -1.6241
54 E A -1.5344
55 R A -1.1552
56 S A -0.6080
57 Y A -0.6417
58 D A -1.4791
59 L A 0.0000
60 T A -1.3209
61 G A -1.5265
62 L A 0.0000
63 K A -3.0532
64 P A -2.6405
65 G A -1.8892
66 T A -1.9065
67 E A -2.2559
68 Y A 0.0000
69 K A -0.9044
70 V A 0.0000
71 W A 1.0230
72 I A 0.0000
73 H A -0.2160
74 G A 0.0000
75 V A -1.1745
76 K A -1.6029
77 G A -1.3599
78 G A -1.0879
79 A A -0.5338
80 S A -0.2672
81 S A 0.0000
82 P A 0.2609
83 P A 0.2845
84 L A 0.7466
85 I A 1.5655
86 A A 0.2646
87 R A -1.5946
88 F A 0.0000
89 T A -1.6611
90 T A -1.9600
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018