Project name: Garetosmab

Status: done

Started: 2026-03-23 07:18:06
Settings
Chain sequence(s) H: QVQLQESGPGLVKPSETLSLTCTVSGGSFSSHFWSWIRQPPGKGLEWIGYILYTGGTSFNPSLKSRVSMSVGTSKNQFSLKLSSVTAADTAVYYCARARSGITFTGIIVPGSFDIWGQGTMVTVSS
L: EIVLTQSPGTLSLSPGERATLSCRASQSVSSSYLAWYQQKPGQAPRLLIYGASSRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQYGSSPWTFGQGTKVEIK
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:11)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:12)
Show buried residues

Minimal score value
-3.4091
Maximal score value
2.7954
Average score
-0.5
Total score value
-117.0052

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q H -1.6310
2 V H -1.3039
3 Q H -1.9939
4 L H 0.0000
5 Q H -1.8128
6 E H 0.0000
7 S H -0.6878
8 G H -0.4522
9 P H -0.0066
11 G H 0.3599
12 L H 0.8860
13 V H 0.0000
14 K H -1.9142
15 P H -1.3430
16 S H -1.2916
17 E H -1.7104
18 T H -1.2952
19 L H 0.0000
20 S H -0.9155
21 L H 0.0000
22 T H -0.6317
23 C H 0.0000
24 T H -1.1503
25 V H 0.0000
26 S H -1.4819
27 G H -1.3367
28 G H -1.0242
29 S H -0.5069
30 F H 0.0000
35 S H -0.2293
36 S H -0.2947
37 H H -0.1049
38 F H 0.2472
39 W H 0.0000
40 S H 0.0000
41 W H 0.0000
42 I H 0.0000
43 R H 0.0000
44 Q H -0.6934
45 P H -0.8207
46 P H -0.9347
47 G H -1.4280
48 K H -2.3808
49 G H -1.5840
50 L H 0.0000
51 E H -0.6683
52 W H 0.0000
53 I H 0.0000
54 G H 0.0000
55 Y H 0.2168
56 I H 0.0000
57 L H 0.4037
58 Y H 0.3976
59 T H 0.0216
63 G H -0.1792
64 G H -0.1890
65 T H -0.0743
66 S H -0.2844
67 F H -0.5332
68 N H -0.7996
69 P H -1.0385
70 S H -0.9200
71 L H 0.0000
72 K H -2.0838
74 S H -1.3570
75 R H -1.4155
76 V H 0.0000
77 S H -1.1074
78 M H 0.0000
79 S H -0.3524
80 V H -0.1178
81 G H -0.7734
82 T H -0.8699
83 S H -1.1684
84 K H -2.0366
85 N H -1.3426
86 Q H -1.0745
87 F H 0.0000
88 S H -0.5292
89 L H 0.0000
90 K H -1.5658
91 L H 0.0000
92 S H -1.0460
93 S H -0.9970
94 V H 0.0000
95 T H -0.5774
96 A H -0.2669
97 A H 0.0548
98 D H 0.0000
99 T H 0.2299
100 A H 0.0000
101 V H 0.2820
102 Y H 0.0000
103 Y H 0.0000
104 C H 0.0000
105 A H 0.0000
106 R H -0.4098
107 A H 0.0000
108 R H -0.2365
109 S H 0.5658
110 G H 0.8673
111 I H 2.1774
111A T H 2.0923
111B F H 2.6351
111C T H 1.9358
112D G H 1.7375
112C I H 2.7954
112B I H 2.5592
112A V H 0.0000
112 P H 0.7467
113 G H 0.0000
114 S H 0.0000
115 F H 0.0000
116 D H -0.5395
117 I H -0.6263
118 W H -0.7259
119 G H 0.0000
120 Q H -1.7961
121 G H 0.0000
122 T H -0.2551
123 M H 0.5246
124 V H 0.0000
125 T H 0.2841
126 V H 0.0000
127 S H -0.5438
128 S H -0.7312
1 E L -1.6598
2 I L 0.0000
3 V L 0.6235
4 L L 0.0000
5 T L -0.7998
6 Q L 0.0000
7 S L -0.9849
8 P L -0.6213
9 G L -1.0172
10 T L -0.9292
11 L L -0.7195
12 S L -0.9449
13 L L -1.0936
14 S L -1.7270
15 P L -1.9279
16 G L -1.9319
17 E L -2.5903
18 R L -3.0835
19 A L 0.0000
20 T L -0.8276
21 L L 0.0000
22 S L -0.8888
23 C L 0.0000
24 R L -2.3048
25 A L 0.0000
26 S L -1.0209
27 Q L -1.7147
28 S L -1.3596
29 V L 0.0000
30 S L -0.6127
36 S L -0.4016
37 S L -0.4662
38 Y L -0.0527
39 L L 0.0000
40 A L 0.0000
41 W L 0.0000
42 Y L 0.0000
43 Q L 0.0000
44 Q L -0.7189
45 K L -1.0049
46 P L -0.7316
47 G L -1.3642
48 Q L -1.9346
49 A L -1.2135
50 P L 0.0000
51 R L -1.0099
52 L L 0.0000
53 L L 0.0000
54 I L 0.0000
55 Y L 0.0030
56 G L -0.2284
57 A L 0.0000
65 S L -0.5786
66 S L -0.5571
67 R L -1.2453
68 A L -0.6700
69 T L -0.5476
70 G L -0.8382
71 I L 0.0000
72 P L -1.2611
74 D L -2.3643
75 R L -2.0374
76 F L 0.0000
77 S L -0.9297
78 G L -0.5099
79 S L -0.6636
80 G L -1.0452
83 S L -1.0314
84 G L -1.1913
85 T L -1.6929
86 D L -2.0374
87 F L 0.0000
88 T L -0.7570
89 L L 0.0000
90 T L -0.8555
91 I L 0.0000
92 S L -2.4013
93 R L -3.4091
94 L L 0.0000
95 E L -2.1582
96 P L -1.5632
97 E L -1.8065
98 D L 0.0000
99 F L 0.0011
100 A L 0.0000
101 V L -0.3612
102 Y L 0.0000
103 Y L 0.0000
104 C L 0.0000
105 Q L 0.0000
106 Q L 0.0000
107 Y L 0.0000
108 G L -0.0873
109 S L -0.7954
114 S L -0.7469
115 P L 0.0000
116 W L 0.0000
117 T L -0.2117
118 F L 0.0000
119 G L 0.0000
120 Q L -1.4055
121 G L 0.0000
122 T L 0.0000
123 K L -1.2788
124 V L 0.0000
125 E L -1.2972
126 I L -1.3172
127 K L -1.9215
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Laboratory of Theory of Biopolymers 2018