| Chain sequence(s) |
A: ATVHQKTRKEKNCPDGYIYSSNTASGYDCGVWICRRVGSAFCSRTGDYTSPSEFDIYEFYVEGW
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:01)
[INFO] Main: Simulation completed successfully. (00:01:01)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | A | A | 0.5907 | |
| 2 | T | A | 0.3311 | |
| 3 | V | A | 1.0868 | |
| 4 | H | A | -0.1176 | |
| 5 | Q | A | -0.7118 | |
| 6 | K | A | -1.5315 | |
| 7 | T | A | -1.6637 | |
| 8 | R | A | -2.6507 | |
| 9 | K | A | -3.5010 | |
| 10 | E | A | -3.4604 | |
| 11 | K | A | -3.1857 | |
| 12 | N | A | -2.3583 | |
| 13 | C | A | -1.0234 | |
| 14 | P | A | -1.4877 | |
| 15 | D | A | -1.7980 | |
| 16 | G | A | -0.6781 | |
| 17 | Y | A | -0.2266 | |
| 18 | I | A | 0.7577 | |
| 19 | Y | A | 1.2272 | |
| 20 | S | A | 0.0000 | |
| 21 | S | A | -0.0263 | |
| 22 | N | A | -1.1282 | |
| 23 | T | A | -0.9915 | |
| 24 | A | A | -0.5934 | |
| 25 | S | A | -0.5024 | |
| 26 | G | A | -0.7111 | |
| 27 | Y | A | -0.8686 | |
| 28 | D | A | -1.6436 | |
| 29 | C | A | -0.1563 | |
| 30 | G | A | 0.4579 | |
| 31 | V | A | 1.9459 | |
| 32 | W | A | 1.9727 | |
| 33 | I | A | 1.4689 | |
| 34 | C | A | 0.0000 | |
| 35 | R | A | 0.2891 | |
| 36 | R | A | -0.5619 | |
| 37 | V | A | 0.9578 | |
| 38 | G | A | 0.1648 | |
| 39 | S | A | -0.0315 | |
| 40 | A | A | 0.1450 | |
| 41 | F | A | 0.8542 | |
| 42 | C | A | 0.0000 | |
| 43 | S | A | -0.7856 | |
| 44 | R | A | -1.7477 | |
| 45 | T | A | -1.0172 | |
| 46 | G | A | -1.0402 | |
| 47 | D | A | -1.2021 | |
| 48 | Y | A | -0.1179 | |
| 49 | T | A | 0.0740 | |
| 50 | S | A | -0.1379 | |
| 51 | P | A | 0.0000 | |
| 52 | S | A | -1.6965 | |
| 53 | E | A | -3.1065 | |
| 54 | F | A | -1.8301 | |
| 55 | D | A | -1.9129 | |
| 56 | I | A | -0.5667 | |
| 57 | Y | A | 0.3015 | |
| 58 | E | A | -0.3519 | |
| 59 | F | A | 1.5430 | |
| 60 | Y | A | 1.2355 | |
| 61 | V | A | 1.0508 | |
| 62 | E | A | -0.5748 | |
| 63 | G | A | 0.0775 | |
| 64 | W | A | 1.0448 |