| Chain sequence(s) |
A: GGKGHGF
C: GGKGHGF B: GGKGHGF E: GGKGHGF D: GGKGHGF G: GGKGHGF F: GGKGHGF I: GGKGHGF H: GGKGHGF K: GGKGHGF J: GGKGHGF L: GGKGHGF input PDB |
| Selected Chain(s) | A,C,B,E,D,G,F,I,H,K,J,L |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:55)
[INFO] Main: Simulation completed successfully. (00:01:57)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | G | A | -1.1229 | |
| 2 | G | A | -1.7019 | |
| 3 | K | A | -2.3227 | |
| 4 | G | A | -0.9757 | |
| 5 | H | A | -0.5436 | |
| 6 | G | A | 0.0000 | |
| 7 | F | A | 0.0000 | |
| 1 | G | B | -1.2676 | |
| 2 | G | B | -1.9564 | |
| 3 | K | B | -1.9675 | |
| 4 | G | B | -0.9776 | |
| 5 | H | B | -0.1421 | |
| 6 | G | B | 0.0000 | |
| 7 | F | B | 1.6419 | |
| 1 | G | C | -1.2032 | |
| 2 | G | C | -2.1930 | |
| 3 | K | C | -3.0371 | |
| 4 | G | C | -1.9854 | |
| 5 | H | C | -1.3410 | |
| 6 | G | C | 0.0000 | |
| 7 | F | C | 1.2902 | |
| 1 | G | D | -1.3865 | |
| 2 | G | D | -2.4810 | |
| 3 | K | D | -3.1875 | |
| 4 | G | D | -2.3400 | |
| 5 | H | D | -1.7778 | |
| 6 | G | D | 0.0000 | |
| 7 | F | D | 1.3047 | |
| 1 | G | E | -1.2886 | |
| 2 | G | E | -2.3281 | |
| 3 | K | E | -3.4196 | |
| 4 | G | E | -2.5947 | |
| 5 | H | E | -1.9204 | |
| 6 | G | E | 0.0000 | |
| 7 | F | E | 1.1738 | |
| 1 | G | F | -1.5296 | |
| 2 | G | F | -2.2070 | |
| 3 | K | F | -3.2211 | |
| 4 | G | F | -2.0510 | |
| 5 | H | F | -1.4147 | |
| 6 | G | F | 0.0000 | |
| 7 | F | F | 0.8609 | |
| 1 | G | G | -1.2592 | |
| 2 | G | G | -2.0419 | |
| 3 | K | G | -3.0441 | |
| 4 | G | G | -2.0843 | |
| 5 | H | G | -1.5531 | |
| 6 | G | G | 0.0000 | |
| 7 | F | G | 0.4832 | |
| 1 | G | H | -1.2601 | |
| 2 | G | H | -2.1612 | |
| 3 | K | H | -3.2147 | |
| 4 | G | H | -2.3490 | |
| 5 | H | H | -1.9931 | |
| 6 | G | H | 0.0000 | |
| 7 | F | H | 0.6273 | |
| 1 | G | I | -1.2431 | |
| 2 | G | I | -2.3466 | |
| 3 | K | I | -3.4047 | |
| 4 | G | I | -2.9138 | |
| 5 | H | I | -2.5558 | |
| 6 | G | I | 0.0000 | |
| 7 | F | I | 0.6714 | |
| 1 | G | J | -1.5742 | |
| 2 | G | J | -2.5614 | |
| 3 | K | J | -3.6661 | |
| 4 | G | J | -2.6639 | |
| 5 | H | J | -2.4273 | |
| 6 | G | J | 0.0000 | |
| 7 | F | J | 0.9248 | |
| 1 | G | K | -1.4959 | |
| 2 | G | K | -2.4403 | |
| 3 | K | K | -3.3289 | |
| 4 | G | K | -2.6004 | |
| 5 | H | K | -1.8822 | |
| 6 | G | K | 0.0000 | |
| 7 | F | K | 0.9059 | |
| 1 | G | L | -1.2104 | |
| 2 | G | L | -1.8988 | |
| 3 | K | L | -3.0045 | |
| 4 | G | L | -2.0578 | |
| 5 | H | L | -1.4849 | |
| 6 | G | L | 0.0000 | |
| 7 | F | L | 1.3299 |