Project name: GGKGHGF12

Status: done

Started: 2026-05-21 08:47:18
Settings
Chain sequence(s) A: GGKGHGF
C: GGKGHGF
B: GGKGHGF
E: GGKGHGF
D: GGKGHGF
G: GGKGHGF
F: GGKGHGF
I: GGKGHGF
H: GGKGHGF
K: GGKGHGF
J: GGKGHGF
L: GGKGHGF
input PDB
Selected Chain(s) A,C,B,E,D,G,F,I,H,K,J,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:55)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:57)
Show buried residues

Minimal score value
-3.6661
Maximal score value
1.6419
Average score
-1.338
Total score value
-112.393

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 G A -1.1229
2 G A -1.7019
3 K A -2.3227
4 G A -0.9757
5 H A -0.5436
6 G A 0.0000
7 F A 0.0000
1 G B -1.2676
2 G B -1.9564
3 K B -1.9675
4 G B -0.9776
5 H B -0.1421
6 G B 0.0000
7 F B 1.6419
1 G C -1.2032
2 G C -2.1930
3 K C -3.0371
4 G C -1.9854
5 H C -1.3410
6 G C 0.0000
7 F C 1.2902
1 G D -1.3865
2 G D -2.4810
3 K D -3.1875
4 G D -2.3400
5 H D -1.7778
6 G D 0.0000
7 F D 1.3047
1 G E -1.2886
2 G E -2.3281
3 K E -3.4196
4 G E -2.5947
5 H E -1.9204
6 G E 0.0000
7 F E 1.1738
1 G F -1.5296
2 G F -2.2070
3 K F -3.2211
4 G F -2.0510
5 H F -1.4147
6 G F 0.0000
7 F F 0.8609
1 G G -1.2592
2 G G -2.0419
3 K G -3.0441
4 G G -2.0843
5 H G -1.5531
6 G G 0.0000
7 F G 0.4832
1 G H -1.2601
2 G H -2.1612
3 K H -3.2147
4 G H -2.3490
5 H H -1.9931
6 G H 0.0000
7 F H 0.6273
1 G I -1.2431
2 G I -2.3466
3 K I -3.4047
4 G I -2.9138
5 H I -2.5558
6 G I 0.0000
7 F I 0.6714
1 G J -1.5742
2 G J -2.5614
3 K J -3.6661
4 G J -2.6639
5 H J -2.4273
6 G J 0.0000
7 F J 0.9248
1 G K -1.4959
2 G K -2.4403
3 K K -3.3289
4 G K -2.6004
5 H K -1.8822
6 G K 0.0000
7 F K 0.9059
1 G L -1.2104
2 G L -1.8988
3 K L -3.0045
4 G L -2.0578
5 H L -1.4849
6 G L 0.0000
7 F L 1.3299
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018