Project name: ECD_13_1st

Status: done

Started: 2024-06-18 20:10:34
Settings
Chain sequence(s) A: NFTLPPNFGKRPTDLELSVKLVKMLENIMLRDGCTLEESKIKEVLDKPKYINLALEAQFSIMPKTALELAKVFRLKNIEALTILVCGCSPTGNLSNLFSLKLKGDPNLSLVMTTCSTLCANKHMPELLEKYSRGIYDGDLKDKVPYKGILISLELVLKPCTEGIELKSKRPQLLREELKKLEEEIEKLSKEVTRLSKENVGKSIMFAMTPKILKTSSLMPKLGFEKGLKISEEACLNGRCRRTVSMETGCRNVQLCSTILNVAFPPEVIGPLFFFPLLYMEQQLKEGEKIIKEYKEEEKLKE
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:06:22)
[INFO]       Main:     Simulation completed successfully.                                          (00:06:23)
Show buried residues

Minimal score value
-4.8709
Maximal score value
2.3458
Average score
-1.0463
Total score value
-315.9855

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 N A -0.3180
2 F A 1.3243
3 T A 0.6554
4 L A -0.0141
5 P A -0.2257
6 P A -1.0822
7 N A -2.2491
8 F A 0.0000
9 G A -1.3879
10 K A -2.3213
11 R A -1.5578
12 P A -0.8924
13 T A -0.7500
14 D A -0.7338
15 L A 0.6952
16 E A -0.4171
17 L A 0.0000
18 S A 0.8514
19 V A 1.4317
20 K A 0.0353
21 L A 0.0000
22 V A 0.3627
23 K A -0.5544
24 M A -0.7454
25 L A 0.0000
26 E A -1.0107
27 N A 0.0000
28 I A -0.5108
29 M A 0.0000
30 L A -0.9037
31 R A -1.3365
32 D A -0.4077
33 G A 0.0000
34 C A 0.0000
35 T A -0.4645
36 L A -0.9742
37 E A -2.0882
38 E A -3.0233
39 S A -2.5344
40 K A -2.7212
41 I A -2.3599
42 K A -3.3782
43 E A -3.6350
44 V A 0.0000
45 L A -1.1525
46 D A -2.7239
47 K A -2.4783
48 P A -1.7640
49 K A -2.3355
50 Y A -1.2832
51 I A -1.0615
52 N A -2.0637
53 L A 0.0000
54 A A 0.0000
55 L A -0.7419
56 E A -1.6084
57 A A 0.0000
58 Q A 0.0000
59 F A 0.0000
60 S A -0.8553
61 I A -0.6680
62 M A 0.0000
63 P A 0.0000
64 K A -1.9092
65 T A 0.0000
66 A A 0.0000
67 L A -1.2586
68 E A -2.2428
69 L A 0.0000
70 A A 0.0000
71 K A -1.6635
72 V A 0.2201
73 F A -1.0612
74 R A -2.3841
75 L A -1.7736
76 K A -2.5029
77 N A -1.8892
78 I A -0.4441
79 E A 0.0000
80 A A 0.0000
81 L A 0.0000
82 T A 0.0000
83 I A 0.0000
84 L A 0.0000
85 V A 0.0000
86 C A 0.0000
87 G A 0.0000
88 C A 0.0000
89 S A 0.0000
90 P A 0.0000
91 T A 0.0000
92 G A 0.0000
93 N A -0.3024
94 L A 0.2750
95 S A 0.0000
96 N A 0.0493
97 L A 1.0026
98 F A 0.0000
99 S A 0.0000
100 L A 0.1495
101 K A -1.0714
102 L A 0.0000
103 K A -2.3201
104 G A 0.0000
105 D A -1.8479
106 P A -0.9696
107 N A -1.7222
108 L A 0.0000
109 S A 0.0000
110 L A -0.6028
111 V A 0.0000
112 M A 0.0000
113 T A 0.0000
114 T A 0.0000
115 C A 0.0000
116 S A 0.0000
117 T A 0.3374
118 L A 0.4625
119 C A -0.1492
120 A A 0.0000
121 N A -1.0704
122 K A -2.2124
123 H A -1.7830
124 M A 0.0000
125 P A -2.0030
126 E A -2.9735
127 L A -1.9842
128 L A 0.0000
129 E A -2.9863
130 K A -2.5951
131 Y A 0.0000
132 S A 0.0000
133 R A -3.2401
134 G A -1.9454
135 I A -1.5091
136 Y A -2.0610
137 D A -2.7684
138 G A -2.7578
139 D A -3.6908
140 L A 0.0000
141 K A -3.5827
142 D A -3.4430
143 K A -2.6088
144 V A 0.0000
145 P A -1.3440
146 Y A -1.3308
147 K A -1.1858
148 G A -0.1615
149 I A 0.0000
150 L A 0.0073
151 I A 0.8584
152 S A 0.0000
153 L A 0.0000
154 E A -0.5888
155 L A -0.3579
156 V A 0.0000
157 L A -0.9748
158 K A -2.2575
159 P A 0.0000
160 C A 0.0000
161 T A -1.5882
162 E A -2.5832
163 G A 0.0000
164 I A -1.7099
165 E A -2.7284
166 L A -2.1017
167 K A -2.4419
168 S A -2.6067
169 K A -2.9141
170 R A -2.7371
171 P A -2.1327
172 Q A -2.2299
173 L A -1.4662
174 L A 0.0000
175 R A -3.4603
176 E A -3.7114
177 E A -3.2919
178 L A -3.2246
179 K A -4.7033
180 K A -4.7870
181 L A 0.0000
182 E A -4.2419
183 E A -4.8709
184 E A -4.1023
185 I A -3.5271
186 E A -4.4084
187 K A -4.1002
188 L A 0.0000
189 S A -2.6869
190 K A -3.4086
191 E A -2.7890
192 V A 0.0000
193 T A -2.1993
194 R A -3.3762
195 L A -2.6249
196 S A 0.0000
197 K A -3.5224
198 E A -3.3944
199 N A 0.0000
200 V A 0.0000
201 G A -2.1166
202 K A -1.6295
203 S A 0.2265
204 I A 0.5914
205 M A 1.5164
206 F A 2.3458
207 A A 1.5612
208 M A 1.0505
209 T A 0.3860
210 P A -0.4102
211 K A -1.1795
212 I A 0.0000
213 L A -0.2144
214 K A -1.4660
215 T A 0.0000
216 S A 0.0000
217 S A -0.8377
218 L A -0.2414
219 M A 0.0000
220 P A 0.0000
221 K A -1.1319
222 L A -0.4705
223 G A 0.0000
224 F A 0.0000
225 E A -2.0208
226 K A -1.7033
227 G A 0.0000
228 L A -1.7056
229 K A -2.7104
230 I A -1.9157
231 S A 0.0000
232 E A -2.4855
233 E A -2.4133
234 A A -1.4123
235 C A -0.7666
236 L A 0.0000
237 N A -2.1943
238 G A -2.3062
239 R A -3.0447
240 C A 0.0000
241 R A -2.1298
242 R A -1.4222
243 T A 0.0000
244 V A 0.0000
245 S A 0.0000
246 M A 0.0000
247 E A 0.0000
248 T A 0.0000
249 G A 0.0000
250 C A 0.0000
251 R A 0.0000
252 N A 0.0000
253 V A 0.0000
254 Q A -0.1256
255 L A 0.0000
256 C A 0.0000
257 S A 0.0000
258 T A 0.0000
259 I A 0.0000
260 L A 0.0000
261 N A 0.5655
262 V A 1.3118
263 A A 0.2486
264 F A 0.0000
265 P A -0.0844
266 P A -0.6792
267 E A -1.1005
268 V A 0.7846
269 I A 0.0000
270 G A 0.0000
271 P A 0.0000
272 L A 0.6151
273 F A 0.0000
274 F A 0.6580
275 F A 0.0000
276 P A 0.0000
277 L A 0.4214
278 L A 0.2403
279 Y A 0.0000
280 M A -0.3257
281 E A -1.4911
282 Q A 0.0000
283 Q A 0.0000
284 L A -1.4947
285 K A -2.9530
286 E A -2.5476
287 G A 0.0000
288 E A -3.3744
289 K A -3.3965
290 I A -2.2535
291 I A 0.0000
292 K A -4.2189
293 E A -4.0094
294 Y A -3.8495
295 K A -4.7282
296 E A -4.8492
297 E A -4.5231
298 E A -4.2186
299 K A -4.0174
300 L A -2.1244
301 K A -3.2693
302 E A -3.1285
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Laboratory of Theory of Biopolymers 2018