| Chain sequence(s) |
A: RADARADARADARADA
C: RADARADARADARADA B: RADARADARADARADA D: RADARADARADARADA input PDB |
| Selected Chain(s) | A,C,B,D |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:52)
[INFO] Main: Simulation completed successfully. (00:01:53)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | R | A | -2.8657 | |
| 2 | A | A | -2.1601 | |
| 3 | D | A | -3.2366 | |
| 4 | A | A | -3.1827 | |
| 5 | R | A | -4.2154 | |
| 6 | A | A | 0.0000 | |
| 7 | D | A | -3.3425 | |
| 8 | A | A | 0.0000 | |
| 9 | R | A | -2.8838 | |
| 10 | A | A | -2.1982 | |
| 11 | D | A | -2.5885 | |
| 12 | A | A | 0.0000 | |
| 13 | R | A | -2.7273 | |
| 14 | A | A | -1.8983 | |
| 15 | D | A | -2.7946 | |
| 16 | A | A | 0.0000 | |
| 1 | R | B | -3.0661 | |
| 2 | A | B | -2.1789 | |
| 3 | D | B | -3.2526 | |
| 4 | A | B | -3.1228 | |
| 5 | R | B | -4.2327 | |
| 6 | A | B | -3.0437 | |
| 7 | D | B | -3.5254 | |
| 8 | A | B | 0.0000 | |
| 9 | R | B | -2.8451 | |
| 10 | A | B | -2.2725 | |
| 11 | D | B | -2.9213 | |
| 12 | A | B | 0.0000 | |
| 13 | R | B | -2.4157 | |
| 14 | A | B | -1.5985 | |
| 15 | D | B | -2.0934 | |
| 16 | A | B | 0.0000 | |
| 1 | R | C | -2.9044 | |
| 2 | A | C | -2.1684 | |
| 3 | D | C | -3.1945 | |
| 4 | A | C | -3.0854 | |
| 5 | R | C | -4.1487 | |
| 6 | A | C | -2.9785 | |
| 7 | D | C | -3.3212 | |
| 8 | A | C | 0.0000 | |
| 9 | R | C | -2.9550 | |
| 10 | A | C | -2.1105 | |
| 11 | D | C | -2.2185 | |
| 12 | A | C | 0.0000 | |
| 13 | R | C | -2.4379 | |
| 14 | A | C | -1.4688 | |
| 15 | D | C | -2.0796 | |
| 16 | A | C | 0.0000 | |
| 1 | R | D | -2.9982 | |
| 2 | A | D | -2.0935 | |
| 3 | D | D | -3.0939 | |
| 4 | A | D | -2.9102 | |
| 5 | R | D | -3.8737 | |
| 6 | A | D | -2.9149 | |
| 7 | D | D | -3.3872 | |
| 8 | A | D | 0.0000 | |
| 9 | R | D | -3.0068 | |
| 10 | A | D | -2.3716 | |
| 11 | D | D | -3.0476 | |
| 12 | A | D | 0.0000 | |
| 13 | R | D | -2.6267 | |
| 14 | A | D | -1.7958 | |
| 15 | D | D | -2.4809 | |
| 16 | A | D | -2.3548 |