Project name: query_structure

Status: done

Started: 2026-03-16 23:42:23
Settings
Chain sequence(s) A: AGETCVGGTCNTPGATCSWPVCTRNGLPV
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:03)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:04)
Show buried residues

Minimal score value
-1.6329
Maximal score value
1.8802
Average score
0.0034
Total score value
0.0982

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 A A 0.0528
2 G A -0.2896
3 E A 0.0000
4 T A 0.6912
5 C A 0.0000
6 V A 1.8802
7 G A 0.4358
8 G A 0.2731
9 T A -0.0519
10 C A -0.3790
11 N A -1.3578
12 T A -0.9644
13 P A -0.9409
14 G A -1.0807
15 A A -0.8286
16 T A -0.2528
17 C A 0.7575
18 S A 0.9673
19 W A 1.7982
20 P A 1.5440
21 V A 1.4609
22 C A 0.0000
23 T A -0.2016
24 R A -1.4824
25 N A -1.6329
26 G A -0.7577
27 L A 0.4465
28 P A 0.0978
29 V A -0.0868
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Laboratory of Theory of Biopolymers 2018