| Chain sequence(s) |
A: RGDGWKPFVIDATVLVALGTHIVGIKLVFF
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 5 Å |
| FoldX usage | No |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] runJob: FoldX not utilized. Treating input pdb file as it was already optimized. (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:02)
[INFO] Main: Simulation completed successfully. (00:00:02)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | R | A | -1.9357 | |
| 2 | G | A | -1.1863 | |
| 3 | D | A | -1.9624 | |
| 4 | G | A | -0.5596 | |
| 5 | W | A | 0.7981 | |
| 6 | K | A | -1.3677 | |
| 7 | P | A | -0.2183 | |
| 8 | F | A | 2.2059 | |
| 9 | V | A | 2.1890 | |
| 10 | I | A | 1.9301 | |
| 11 | D | A | -1.4159 | |
| 12 | A | A | -0.2759 | |
| 13 | T | A | 0.3216 | |
| 14 | V | A | 1.3273 | |
| 15 | L | A | 2.0955 | |
| 16 | V | A | 2.0802 | |
| 17 | A | A | 0.8003 | |
| 18 | L | A | 1.5224 | |
| 19 | G | A | 0.0816 | |
| 20 | T | A | -0.2882 | |
| 21 | H | A | -0.7958 | |
| 22 | I | A | 1.3401 | |
| 23 | V | A | 1.9631 | |
| 24 | G | A | 0.2881 | |
| 25 | I | A | 0.8700 | |
| 26 | K | A | -1.1737 | |
| 27 | L | A | 1.5617 | |
| 28 | V | A | 2.4469 | |
| 29 | F | A | 2.6400 | |
| 30 | F | A | 2.2952 |