Project name: Pep5-Mut10-KLVFF

Status: done

Started: 2026-02-11 06:29:41
Settings
Chain sequence(s) A: RGDGWKPFVIDATVLVALGTHIVGIKLVFF
input PDB
Selected Chain(s) A
Distance of aggregation 5 Å
FoldX usage No
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       runJob:   FoldX not utilized. Treating input pdb file as it was already optimized.    (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:02)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:02)
Show buried residues

Minimal score value
-1.9624
Maximal score value
2.64
Average score
0.5859
Total score value
17.5776

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 R A -1.9357
2 G A -1.1863
3 D A -1.9624
4 G A -0.5596
5 W A 0.7981
6 K A -1.3677
7 P A -0.2183
8 F A 2.2059
9 V A 2.1890
10 I A 1.9301
11 D A -1.4159
12 A A -0.2759
13 T A 0.3216
14 V A 1.3273
15 L A 2.0955
16 V A 2.0802
17 A A 0.8003
18 L A 1.5224
19 G A 0.0816
20 T A -0.2882
21 H A -0.7958
22 I A 1.3401
23 V A 1.9631
24 G A 0.2881
25 I A 0.8700
26 K A -1.1737
27 L A 1.5617
28 V A 2.4469
29 F A 2.6400
30 F A 2.2952
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Laboratory of Theory of Biopolymers 2018