Project name: LC1_2_AE76A

Status: done

Started: 2026-07-29 14:09:14
Settings
Chain sequence(s) A: SEAKERASDLKAEAAARALAIIDAARAAVAAADPALRPLALAASGEAASAIALGMQEGLEVGVERVREVAERAPPEMAAALREAARLLEEAGRRVEELL
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:38)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:38)
Show buried residues

Minimal score value
-4.9213
Maximal score value
0.6069
Average score
-1.4495
Total score value
-143.5047

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 S A -2.2326
2 E A -3.4963
3 A A -2.7702
4 K A -3.6557
5 E A -4.7965
6 R A -4.2292
7 A A 0.0000
8 S A -3.2439
9 D A -3.8567
10 L A 0.0000
11 K A -2.5277
12 A A -2.0014
13 E A -2.7279
14 A A 0.0000
15 A A 0.0000
16 A A -1.0719
17 R A -1.8694
18 A A 0.0000
19 L A -0.1504
20 A A -0.4302
21 I A -0.2026
22 I A 0.0000
23 D A -1.1250
24 A A -0.4062
25 A A -0.6723
26 R A -0.8377
27 A A -0.4582
28 A A -0.7695
29 V A 0.0000
30 A A -0.5444
31 A A -0.4175
32 A A -0.5599
33 D A -1.1659
34 P A -0.8719
35 A A -0.4204
36 L A -0.1574
37 R A -0.7458
38 P A 0.1258
39 L A 0.6069
40 A A 0.0000
41 L A 0.4197
42 A A 0.0153
43 A A 0.0000
44 S A 0.0000
45 G A -1.1168
46 E A -2.2934
47 A A 0.0000
48 A A -0.7341
49 S A -1.0023
50 A A 0.0000
51 I A 0.0000
52 A A -0.4495
53 L A -0.8283
54 G A 0.0000
55 M A -0.9399
56 Q A -1.7873
57 E A -2.4129
58 G A -1.5981
59 L A 0.0000
60 E A -3.2653
61 V A -1.9534
62 G A 0.0000
63 V A 0.0000
64 E A -3.9263
65 R A -3.7995
66 V A 0.0000
67 R A -4.6892
68 E A -4.6844
69 V A -3.5320
70 A A 0.0000
71 E A -3.7958
72 R A -3.1076
73 A A -1.6652
74 P A 0.0000
75 P A -1.5053
76 E A -1.8200
77 M A 0.0000
78 A A -2.2500
79 A A -1.5587
80 A A 0.0000
81 L A 0.0000
82 R A -3.3083
83 E A -2.2909
84 A A 0.0000
85 A A 0.0000
86 R A -3.6021
87 L A -2.6673
88 L A 0.0000
89 E A -4.3974
90 E A -4.3368
91 A A 0.0000
92 G A -3.9257
93 R A -4.9213
94 R A -4.2471
95 V A 0.0000
96 E A -3.3611
97 E A -2.9791
98 L A -1.4543
99 L A -0.0510
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018