| Chain sequence(s) |
A: GGHKGHK
C: GGHKGHK B: GGHKGHK E: GGHKGHK D: GGHKGHK G: GGHKGHK F: GGHKGHK I: GGHKGHK H: GGHKGHK K: GGHKGHK J: GGHKGHK M: GGHKGHK L: GGHKGHK O: GGHKGHK N: GGHKGHK Q: GGHKGHK P: GGHKGHK S: GGHKGHK R: GGHKGHK T: GGHKGHK input PDB |
| Selected Chain(s) | A,C,B,E,D,G,F,I,H,K,J,M,L,O,N,Q,P,S,R,T |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:15:48)
[INFO] Main: Simulation completed successfully. (00:15:53)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | G | A | -1.8160 | |
| 2 | G | A | 0.0000 | |
| 3 | H | A | 0.0000 | |
| 4 | K | A | 0.0000 | |
| 5 | G | A | 0.0000 | |
| 6 | H | A | 0.0000 | |
| 7 | K | A | -2.5224 | |
| 1 | G | B | -1.5257 | |
| 2 | G | B | -1.2963 | |
| 3 | H | B | -0.9539 | |
| 4 | K | B | 0.0000 | |
| 5 | G | B | 0.0000 | |
| 6 | H | B | 0.0000 | |
| 7 | K | B | -1.8126 | |
| 1 | G | C | -1.8118 | |
| 2 | G | C | -1.5677 | |
| 3 | H | C | 0.0000 | |
| 4 | K | C | 0.0000 | |
| 5 | G | C | 0.0000 | |
| 6 | H | C | 0.0000 | |
| 7 | K | C | -1.5899 | |
| 1 | G | D | -1.3641 | |
| 2 | G | D | -1.9271 | |
| 3 | H | D | -2.7861 | |
| 4 | K | D | -3.0439 | |
| 5 | G | D | -3.0122 | |
| 6 | H | D | -3.1093 | |
| 7 | K | D | -3.3383 | |
| 1 | G | E | -1.3230 | |
| 2 | G | E | -1.6760 | |
| 3 | H | E | 0.0000 | |
| 4 | K | E | -2.6352 | |
| 5 | G | E | 0.0000 | |
| 6 | H | E | -3.3480 | |
| 7 | K | E | -3.6796 | |
| 1 | G | F | -1.2143 | |
| 2 | G | F | -1.2722 | |
| 3 | H | F | 0.0000 | |
| 4 | K | F | -1.8207 | |
| 5 | G | F | 0.0000 | |
| 6 | H | F | -3.1001 | |
| 7 | K | F | -3.5902 | |
| 1 | G | G | -1.3635 | |
| 2 | G | G | -1.2161 | |
| 3 | H | G | 0.0000 | |
| 4 | K | G | -1.5414 | |
| 5 | G | G | 0.0000 | |
| 6 | H | G | -2.7280 | |
| 7 | K | G | -3.3957 | |
| 1 | G | H | -1.4661 | |
| 2 | G | H | -1.3930 | |
| 3 | H | H | -1.6215 | |
| 4 | K | H | -1.5668 | |
| 5 | G | H | 0.0000 | |
| 6 | H | H | -2.3781 | |
| 7 | K | H | -2.8088 | |
| 1 | G | I | -1.3715 | |
| 2 | G | I | -1.6439 | |
| 3 | H | I | 0.0000 | |
| 4 | K | I | -1.8081 | |
| 5 | G | I | 0.0000 | |
| 6 | H | I | -2.6613 | |
| 7 | K | I | -3.1917 | |
| 1 | G | J | -1.2397 | |
| 2 | G | J | -1.8204 | |
| 3 | H | J | -2.2287 | |
| 4 | K | J | -2.5764 | |
| 5 | G | J | 0.0000 | |
| 6 | H | J | -2.9591 | |
| 7 | K | J | -2.9460 | |
| 1 | G | K | -1.8471 | |
| 2 | G | K | 0.0000 | |
| 3 | H | K | 0.0000 | |
| 4 | K | K | -0.7014 | |
| 5 | G | K | 0.0000 | |
| 6 | H | K | 0.0000 | |
| 7 | K | K | -2.1406 | |
| 1 | G | L | -1.2625 | |
| 2 | G | L | -1.9709 | |
| 3 | H | L | -2.1978 | |
| 4 | K | L | -2.4795 | |
| 5 | G | L | -2.1191 | |
| 6 | H | L | -2.8364 | |
| 7 | K | L | -2.8310 | |
| 1 | G | M | -1.5646 | |
| 2 | G | M | -2.1631 | |
| 3 | H | M | -1.7831 | |
| 4 | K | M | 0.0000 | |
| 5 | G | M | -1.6361 | |
| 6 | H | M | 0.0000 | |
| 7 | K | M | -3.1454 | |
| 1 | G | N | -1.3674 | |
| 2 | G | N | -1.9675 | |
| 3 | H | N | -2.0762 | |
| 4 | K | N | -2.5888 | |
| 5 | G | N | 0.0000 | |
| 6 | H | N | -3.1178 | |
| 7 | K | N | -3.0171 | |
| 1 | G | O | -1.5569 | |
| 2 | G | O | -2.0166 | |
| 3 | H | O | 0.0000 | |
| 4 | K | O | -2.3388 | |
| 5 | G | O | 0.0000 | |
| 6 | H | O | -2.9613 | |
| 7 | K | O | -3.3996 | |
| 1 | G | P | -1.5123 | |
| 2 | G | P | -1.8349 | |
| 3 | H | P | 0.0000 | |
| 4 | K | P | -2.1924 | |
| 5 | G | P | 0.0000 | |
| 6 | H | P | -3.0303 | |
| 7 | K | P | -3.6320 | |
| 1 | G | Q | -1.4886 | |
| 2 | G | Q | -1.7298 | |
| 3 | H | Q | -1.8234 | |
| 4 | K | Q | -1.9681 | |
| 5 | G | Q | -2.0364 | |
| 6 | H | Q | -2.6917 | |
| 7 | K | Q | -2.8959 | |
| 1 | G | R | -1.5221 | |
| 2 | G | R | -1.8149 | |
| 3 | H | R | 0.0000 | |
| 4 | K | R | 0.0000 | |
| 5 | G | R | 0.0000 | |
| 6 | H | R | 0.0000 | |
| 7 | K | R | -2.6319 | |
| 1 | G | S | -1.6497 | |
| 2 | G | S | -1.9900 | |
| 3 | H | S | -2.6213 | |
| 4 | K | S | -2.6645 | |
| 5 | G | S | 0.0000 | |
| 6 | H | S | -2.7399 | |
| 7 | K | S | -3.1414 | |
| 1 | G | T | -1.2721 | |
| 2 | G | T | -1.8723 | |
| 3 | H | T | -2.7915 | |
| 4 | K | T | -3.1271 | |
| 5 | G | T | -3.0873 | |
| 6 | H | T | -2.6340 | |
| 7 | K | T | -2.8886 |