Project name: a8d454056a0e141

Status: done

Started: 2026-02-11 11:56:47
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Chain sequence(s) A: GGHKGHK
C: GGHKGHK
B: GGHKGHK
E: GGHKGHK
D: GGHKGHK
G: GGHKGHK
F: GGHKGHK
I: GGHKGHK
H: GGHKGHK
K: GGHKGHK
J: GGHKGHK
M: GGHKGHK
L: GGHKGHK
O: GGHKGHK
N: GGHKGHK
Q: GGHKGHK
P: GGHKGHK
S: GGHKGHK
R: GGHKGHK
T: GGHKGHK
input PDB
Selected Chain(s) A,C,B,E,D,G,F,I,H,K,J,M,L,O,N,Q,P,S,R,T
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:15:48)
[INFO]       Main:     Simulation completed successfully.                                          (00:15:53)
Show buried residues

Minimal score value
-3.6796
Maximal score value
0.0
Average score
-1.6102
Total score value
-225.4334

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 G A -1.8160
2 G A 0.0000
3 H A 0.0000
4 K A 0.0000
5 G A 0.0000
6 H A 0.0000
7 K A -2.5224
1 G B -1.5257
2 G B -1.2963
3 H B -0.9539
4 K B 0.0000
5 G B 0.0000
6 H B 0.0000
7 K B -1.8126
1 G C -1.8118
2 G C -1.5677
3 H C 0.0000
4 K C 0.0000
5 G C 0.0000
6 H C 0.0000
7 K C -1.5899
1 G D -1.3641
2 G D -1.9271
3 H D -2.7861
4 K D -3.0439
5 G D -3.0122
6 H D -3.1093
7 K D -3.3383
1 G E -1.3230
2 G E -1.6760
3 H E 0.0000
4 K E -2.6352
5 G E 0.0000
6 H E -3.3480
7 K E -3.6796
1 G F -1.2143
2 G F -1.2722
3 H F 0.0000
4 K F -1.8207
5 G F 0.0000
6 H F -3.1001
7 K F -3.5902
1 G G -1.3635
2 G G -1.2161
3 H G 0.0000
4 K G -1.5414
5 G G 0.0000
6 H G -2.7280
7 K G -3.3957
1 G H -1.4661
2 G H -1.3930
3 H H -1.6215
4 K H -1.5668
5 G H 0.0000
6 H H -2.3781
7 K H -2.8088
1 G I -1.3715
2 G I -1.6439
3 H I 0.0000
4 K I -1.8081
5 G I 0.0000
6 H I -2.6613
7 K I -3.1917
1 G J -1.2397
2 G J -1.8204
3 H J -2.2287
4 K J -2.5764
5 G J 0.0000
6 H J -2.9591
7 K J -2.9460
1 G K -1.8471
2 G K 0.0000
3 H K 0.0000
4 K K -0.7014
5 G K 0.0000
6 H K 0.0000
7 K K -2.1406
1 G L -1.2625
2 G L -1.9709
3 H L -2.1978
4 K L -2.4795
5 G L -2.1191
6 H L -2.8364
7 K L -2.8310
1 G M -1.5646
2 G M -2.1631
3 H M -1.7831
4 K M 0.0000
5 G M -1.6361
6 H M 0.0000
7 K M -3.1454
1 G N -1.3674
2 G N -1.9675
3 H N -2.0762
4 K N -2.5888
5 G N 0.0000
6 H N -3.1178
7 K N -3.0171
1 G O -1.5569
2 G O -2.0166
3 H O 0.0000
4 K O -2.3388
5 G O 0.0000
6 H O -2.9613
7 K O -3.3996
1 G P -1.5123
2 G P -1.8349
3 H P 0.0000
4 K P -2.1924
5 G P 0.0000
6 H P -3.0303
7 K P -3.6320
1 G Q -1.4886
2 G Q -1.7298
3 H Q -1.8234
4 K Q -1.9681
5 G Q -2.0364
6 H Q -2.6917
7 K Q -2.8959
1 G R -1.5221
2 G R -1.8149
3 H R 0.0000
4 K R 0.0000
5 G R 0.0000
6 H R 0.0000
7 K R -2.6319
1 G S -1.6497
2 G S -1.9900
3 H S -2.6213
4 K S -2.6645
5 G S 0.0000
6 H S -2.7399
7 K S -3.1414
1 G T -1.2721
2 G T -1.8723
3 H T -2.7915
4 K T -3.1271
5 G T -3.0873
6 H T -2.6340
7 K T -2.8886
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Laboratory of Theory of Biopolymers 2018