| Chain sequence(s) |
A: DAARNPVKYGSGGSGKQSSRVPLY
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 5 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:11)
[INFO] Main: Simulation completed successfully. (00:00:11)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | D | A | -1.7799 | |
| 2 | A | A | -0.2582 | |
| 3 | A | A | -0.2577 | |
| 4 | R | A | -1.9169 | |
| 5 | N | A | -0.8389 | |
| 6 | P | A | -0.0857 | |
| 7 | V | A | 1.4220 | |
| 8 | K | A | -1.1435 | |
| 9 | Y | A | 0.9238 | |
| 10 | G | A | -0.3044 | |
| 11 | S | A | -0.3845 | |
| 12 | G | A | -0.5895 | |
| 13 | G | A | -0.5913 | |
| 14 | S | A | -0.3870 | |
| 15 | G | A | -0.8169 | |
| 16 | K | A | -2.0092 | |
| 17 | Q | A | -1.5552 | |
| 18 | S | A | -0.4740 | |
| 19 | S | A | -0.5899 | |
| 20 | R | A | -1.5636 | |
| 21 | V | A | 1.3946 | |
| 22 | P | A | 0.3474 | |
| 23 | L | A | 1.7707 | |
| 24 | Y | A | 1.6327 |