Project name: D2K

Status: done

Started: 2026-07-20 05:45:29
Settings
Chain sequence(s) A: DAARNPVKYGSGGSGKQSSRVPLY
input PDB
Selected Chain(s) A
Distance of aggregation 5 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:11)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:11)
Show buried residues

Minimal score value
-2.0092
Maximal score value
1.7707
Average score
-0.3356
Total score value
-8.0551

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 D A -1.7799
2 A A -0.2582
3 A A -0.2577
4 R A -1.9169
5 N A -0.8389
6 P A -0.0857
7 V A 1.4220
8 K A -1.1435
9 Y A 0.9238
10 G A -0.3044
11 S A -0.3845
12 G A -0.5895
13 G A -0.5913
14 S A -0.3870
15 G A -0.8169
16 K A -2.0092
17 Q A -1.5552
18 S A -0.4740
19 S A -0.5899
20 R A -1.5636
21 V A 1.3946
22 P A 0.3474
23 L A 1.7707
24 Y A 1.6327
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Laboratory of Theory of Biopolymers 2018