| Chain sequence(s) |
A: FEFEFEGSKGH
C: FEFEFEGSKGH B: FEFEFEGSKGH E: FEFEFEGSKGH D: FEFEFEGSKGH G: FEFEFEGSKGH F: FEFEFEGSKGH I: FEFEFEGSKGH H: FEFEFEGSKGH K: FEFEFEGSKGH J: FEFEFEGSKGH L: FEFEFEGSKGH input PDB |
| Selected Chain(s) | A,C,B,E,D,G,F,I,H,K,J,L |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:06:19)
[INFO] Main: Simulation completed successfully. (00:06:22)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | F | A | -1.4092 | |
| 2 | E | A | -2.6293 | |
| 3 | F | A | 0.0000 | |
| 4 | E | A | -2.8030 | |
| 5 | F | A | 0.0000 | |
| 6 | E | A | -3.3825 | |
| 7 | G | A | 0.0000 | |
| 8 | S | A | -2.4906 | |
| 9 | K | A | 0.0000 | |
| 10 | G | A | -1.9741 | |
| 11 | H | A | -1.3027 | |
| 1 | F | B | -1.3131 | |
| 2 | E | B | -2.8434 | |
| 3 | F | B | 0.0000 | |
| 4 | E | B | -3.2283 | |
| 5 | F | B | 0.0000 | |
| 6 | E | B | -3.8800 | |
| 7 | G | B | 0.0000 | |
| 8 | S | B | -2.5595 | |
| 9 | K | B | 0.0000 | |
| 10 | G | B | -1.6903 | |
| 11 | H | B | -1.1181 | |
| 1 | F | C | 0.4372 | |
| 2 | E | C | -1.6962 | |
| 3 | F | C | -1.6170 | |
| 4 | E | C | -2.8980 | |
| 5 | F | C | -2.6051 | |
| 6 | E | C | -3.2204 | |
| 7 | G | C | -2.3644 | |
| 8 | S | C | -1.6178 | |
| 9 | K | C | -2.0842 | |
| 10 | G | C | -1.6452 | |
| 11 | H | C | -1.3209 | |
| 1 | F | D | 0.5420 | |
| 2 | E | D | -1.8278 | |
| 3 | F | D | -1.1729 | |
| 4 | E | D | -2.4540 | |
| 5 | F | D | -1.0324 | |
| 6 | E | D | -2.5638 | |
| 7 | G | D | -2.5280 | |
| 8 | S | D | -2.1594 | |
| 9 | K | D | -2.6673 | |
| 10 | G | D | -2.1884 | |
| 11 | H | D | -2.1067 | |
| 1 | F | E | -0.8274 | |
| 2 | E | E | -2.7466 | |
| 3 | F | E | 0.0000 | |
| 4 | E | E | -3.4025 | |
| 5 | F | E | 0.0000 | |
| 6 | E | E | -3.6631 | |
| 7 | G | E | 0.0000 | |
| 8 | S | E | -2.5249 | |
| 9 | K | E | -2.3454 | |
| 10 | G | E | -2.5197 | |
| 11 | H | E | -2.3035 | |
| 1 | F | F | -1.6680 | |
| 2 | E | F | -3.2170 | |
| 3 | F | F | 0.0000 | |
| 4 | E | F | -3.1397 | |
| 5 | F | F | 0.0000 | |
| 6 | E | F | -3.7519 | |
| 7 | G | F | 0.0000 | |
| 8 | S | F | -2.5596 | |
| 9 | K | F | 0.0000 | |
| 10 | G | F | -1.9701 | |
| 11 | H | F | -1.5687 | |
| 1 | F | G | -1.4941 | |
| 2 | E | G | -2.9104 | |
| 3 | F | G | 0.0000 | |
| 4 | E | G | -2.8862 | |
| 5 | F | G | 0.0000 | |
| 6 | E | G | -3.8417 | |
| 7 | G | G | 0.0000 | |
| 8 | S | G | -2.6385 | |
| 9 | K | G | 0.0000 | |
| 10 | G | G | -2.5528 | |
| 11 | H | G | -2.0522 | |
| 1 | F | H | -1.4109 | |
| 2 | E | H | -2.8109 | |
| 3 | F | H | 0.0000 | |
| 4 | E | H | -2.9830 | |
| 5 | F | H | 0.0000 | |
| 6 | E | H | -3.8037 | |
| 7 | G | H | 0.0000 | |
| 8 | S | H | -2.7316 | |
| 9 | K | H | 0.0000 | |
| 10 | G | H | -2.3230 | |
| 11 | H | H | -1.9415 | |
| 1 | F | I | -1.4431 | |
| 2 | E | I | -3.0450 | |
| 3 | F | I | 0.0000 | |
| 4 | E | I | -3.4254 | |
| 5 | F | I | 0.0000 | |
| 6 | E | I | -3.7744 | |
| 7 | G | I | 0.0000 | |
| 8 | S | I | -2.3587 | |
| 9 | K | I | 0.0000 | |
| 10 | G | I | -1.7488 | |
| 11 | H | I | -1.0861 | |
| 1 | F | J | 0.4556 | |
| 2 | E | J | -1.6454 | |
| 3 | F | J | -1.3395 | |
| 4 | E | J | -2.3069 | |
| 5 | F | J | -1.3918 | |
| 6 | E | J | -2.7351 | |
| 7 | G | J | -2.4302 | |
| 8 | S | J | -1.9802 | |
| 9 | K | J | -2.0693 | |
| 10 | G | J | -1.8768 | |
| 11 | H | J | -1.5885 | |
| 1 | F | K | 1.1249 | |
| 2 | E | K | -1.1426 | |
| 3 | F | K | -0.9350 | |
| 4 | E | K | -2.7426 | |
| 5 | F | K | -1.9258 | |
| 6 | E | K | -2.6502 | |
| 7 | G | K | -1.7955 | |
| 8 | S | K | -1.1026 | |
| 9 | K | K | -1.3019 | |
| 10 | G | K | -1.5635 | |
| 11 | H | K | -1.6190 | |
| 1 | F | L | -0.0714 | |
| 2 | E | L | -2.0371 | |
| 3 | F | L | 0.0000 | |
| 4 | E | L | -3.0423 | |
| 5 | F | L | 0.0000 | |
| 6 | E | L | -3.2535 | |
| 7 | G | L | -2.1443 | |
| 8 | S | L | -1.8533 | |
| 9 | K | L | 0.0000 | |
| 10 | G | L | -1.9396 | |
| 11 | H | L | -2.0332 |