Project name: query_structure

Status: done

Started: 2026-03-17 00:16:10
Settings
Chain sequence(s) A: NFDAAPNMPHPGDMNFDAAPNMPHDGDM
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:09)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:09)
Show buried residues

Minimal score value
-2.7716
Maximal score value
0.4915
Average score
-1.0658
Total score value
-29.8422

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 N A -0.6451
2 F A 0.4105
3 D A -1.3224
4 A A -0.6470
5 A A -0.4246
6 P A -0.9397
7 N A -1.2085
8 M A -0.0392
9 P A -0.9642
10 H A -1.7051
11 P A -1.1928
12 G A -1.3884
13 D A -2.2240
14 M A -0.5221
15 N A -1.1974
16 F A 0.4915
17 D A -1.6579
18 A A -1.0741
19 A A -0.4041
20 P A -0.6607
21 N A -1.3066
22 M A -0.1043
23 P A -1.0821
24 H A -2.5445
25 D A -2.7716
26 G A -2.3051
27 D A -2.1944
28 M A -0.2183
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Laboratory of Theory of Biopolymers 2018