Project name: TIMP3_5

Status: done

Started: 2026-05-22 05:08:20
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Chain sequence(s) A: MTPWLGLIVLLGSWSLGDWGAEACTCSPSHPQDAFCNSDIVIRAKVVGKKLVKEGPFGTLVYTIKQMKMYRGFTKMPHVQYIHTEASESLCGLKLEVNKYQYLLTGRVYDGKMYTGLCNFVERWDQLTLSQRKGLNYRYHLGCNCKIKSCYYLPCFVTSKNECLWTDMLSNFGYPGYQSKHYACIRQKGGYCSWYRGWAPPDKSIINATDP
input PDB
Selected Chain(s) A
Distance of aggregation 5 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:02:59)
[INFO]       Main:     Simulation completed successfully.                                          (00:03:01)
Show buried residues

Minimal score value
-2.2137
Maximal score value
2.6188
Average score
-0.1035
Total score value
-21.8294

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A 1.0407
2 T A 0.0723
3 P A -0.0514
4 W A 1.4248
5 L A 1.6805
6 G A 0.0995
7 L A 1.8278
8 I A 2.6188
9 V A 2.4278
10 L A 2.1591
11 L A 1.7452
12 G A -0.2181
13 S A -0.0787
14 W A 1.1073
15 S A 0.3000
16 L A 1.4208
17 G A -0.5111
18 D A -1.7014
19 W A 0.7639
20 G A -0.4198
21 A A -0.3613
22 E A -1.7983
23 A A -0.2609
24 C A 0.1517
25 T A 0.0078
26 C A 0.2324
27 S A -0.1735
28 P A -0.1303
29 S A -0.1061
30 H A 0.0000
31 P A 0.0000
32 Q A 0.0000
33 D A -0.5463
34 A A -0.0950
35 F A 0.0000
36 C A -0.1906
37 N A -1.2561
38 S A 0.0000
39 D A -0.3366
40 I A 0.0000
41 V A 0.0000
42 I A 0.0000
43 R A -0.4588
44 A A 0.0000
45 K A -0.6205
46 V A 0.0000
47 V A 0.3409
48 G A -0.3309
49 K A -2.0250
50 K A -1.8867
51 L A 0.4338
52 V A 0.2400
53 K A -1.9541
54 E A -2.2137
55 G A -0.8397
56 P A 0.0087
57 F A 1.8954
58 G A 0.0000
59 T A -0.0903
60 L A 0.0000
61 V A 0.1700
62 Y A 0.0000
63 T A 0.0775
64 I A 0.0000
65 K A -1.7561
66 Q A -0.5202
67 M A 0.2583
68 K A -1.1397
69 M A 0.0000
70 Y A 0.0152
71 R A -0.6002
72 G A 0.1882
73 F A 1.8875
74 T A -0.0285
75 K A -1.6904
76 M A -0.2286
77 P A -0.1151
78 H A -1.0319
79 V A 0.0000
80 Q A -1.0350
81 Y A 0.6797
82 I A 0.0000
83 H A 0.0000
84 T A 0.0000
85 E A -0.7045
86 A A -0.1288
87 S A -0.3690
88 E A -1.8218
89 S A -0.2834
90 L A 0.5086
91 C A 0.1290
92 G A 0.0000
93 L A 0.0000
94 K A -1.7000
95 L A 0.0000
96 E A -0.9068
97 V A 0.3544
98 N A -1.4373
99 K A -1.8862
100 Y A -0.1325
101 Q A -0.3106
102 Y A 0.0000
103 L A 0.0000
104 L A 0.0000
105 T A 0.0000
106 G A 0.0000
107 R A -0.7827
108 V A 0.3086
109 Y A 0.9578
110 D A -1.6472
111 G A -0.9463
112 K A -0.9690
113 M A 0.0000
114 Y A 0.5069
115 T A 0.0000
116 G A 0.0000
117 L A 0.7600
118 C A 0.5925
119 N A -0.2628
120 F A 0.2104
121 V A 0.2476
122 E A -0.4637
123 R A -0.5127
124 W A -0.2813
125 D A -1.9798
126 Q A -1.5168
127 L A 0.0000
128 T A 0.0823
129 L A 0.5348
130 S A 0.0000
131 Q A 0.0000
132 R A -0.8208
133 K A -1.5915
134 G A 0.0000
135 L A 0.0000
136 N A -1.0337
137 Y A 1.0837
138 R A 0.0000
139 Y A 0.0000
140 H A -0.8985
141 L A 0.3360
142 G A 0.0000
143 C A 0.0631
144 N A -1.2076
145 C A -0.4642
146 K A -1.6493
147 I A -0.1857
148 K A -0.3749
149 S A -0.1520
150 C A 0.0000
151 Y A 1.3389
152 Y A 1.7956
153 L A 1.7159
154 P A 0.2026
155 C A 0.4507
156 F A 2.2088
157 V A 1.6559
158 T A 0.1483
159 S A -0.4222
160 K A -1.7103
161 N A -0.8228
162 E A 0.0000
163 C A 0.0000
164 L A 0.2216
165 W A 0.0000
166 T A -0.0139
167 D A 0.0000
168 M A 0.2192
169 L A 0.1948
170 S A -0.4071
171 N A -1.0550
172 F A 1.1565
173 G A 0.2019
174 Y A 1.1247
175 P A 0.1762
176 G A 0.0000
177 Y A 1.2860
178 Q A 0.1030
179 S A 0.0000
180 K A -0.6352
181 H A -0.2899
182 Y A 0.0392
183 A A 0.0000
184 C A 0.0000
185 I A -0.1009
186 R A -1.6741
187 Q A -0.9730
188 K A -1.8497
189 G A -0.8036
190 G A -0.1247
191 Y A 0.5342
192 C A 0.0000
193 S A -0.0088
194 W A 0.3412
195 Y A 0.5276
196 R A -1.0956
197 G A -0.0772
198 W A 1.1772
199 A A 0.2111
200 P A -0.2141
201 P A -0.5904
202 D A -2.1374
203 K A -2.0616
204 S A -0.1438
205 I A 2.3446
206 I A 2.1414
207 N A -0.8674
208 A A -0.1748
209 T A -0.3995
210 D A -1.8433
211 P A -0.5792
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Laboratory of Theory of Biopolymers 2018