| Chain sequence(s) |
A: GGGHKFF
C: GGGHKFF B: GGGHKFF D: GGGHKFF input PDB |
| Selected Chain(s) | A,C,B,D |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:53)
[INFO] Main: Simulation completed successfully. (00:00:54)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | G | A | -1.2818 | |
| 2 | G | A | -1.5532 | |
| 3 | G | A | -1.4397 | |
| 4 | H | A | -1.2280 | |
| 5 | K | A | -0.9358 | |
| 6 | F | A | 0.7457 | |
| 7 | F | A | 1.8593 | |
| 1 | G | B | -0.9027 | |
| 2 | G | B | -1.5360 | |
| 3 | G | B | -1.4801 | |
| 4 | H | B | -1.0133 | |
| 5 | K | B | -1.1226 | |
| 6 | F | B | 0.8114 | |
| 7 | F | B | 2.1188 | |
| 1 | G | C | -1.0706 | |
| 2 | G | C | -1.4237 | |
| 3 | G | C | -0.6242 | |
| 4 | H | C | -0.0842 | |
| 5 | K | C | -1.0593 | |
| 6 | F | C | 0.3023 | |
| 7 | F | C | 1.7485 | |
| 1 | G | D | -1.5007 | |
| 2 | G | D | -1.6931 | |
| 3 | G | D | -1.4911 | |
| 4 | H | D | -0.8768 | |
| 5 | K | D | -0.7705 | |
| 6 | F | D | 0.4758 | |
| 7 | F | D | 1.7160 |