Project name: a9f4b2eeea417ba

Status: done

Started: 2024-12-18 09:19:37
Settings
Chain sequence(s) H: QVQLRESGPSLVKPSQTLFLTCTVSGFSLTSYSVNWVRQTPGKMLECLGGIATSGSTGYNPVLKSRLRITKDNSKSQVSLSVSNVTPEDTATYYCAKWSSRGGYDCGVHSSDYSYLDAWGQGLLVTVSS
L: AVLTQPSSVSASLGQRVSITCSGSSSNIGRYGATWYQQVPGSGLRTIIYGSSRRPSGVPDRFSGSKSGNTVTLTISSLQPEDEADYFCAAYDISTNAVFGSGTTLTLL
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:02:15)
[INFO]       Main:     Simulation completed successfully.                                          (00:02:17)
Show buried residues

Minimal score value
-3.1651
Maximal score value
1.7949
Average score
-0.4908
Total score value
-116.3155

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q H -1.1291
2 V H -0.3136
3 Q H -1.6468
4 L H 0.0000
5 R H -2.5318
6 E H -1.6082
7 S H -0.6136
8 G H 0.3031
9 P H 0.7000
11 S H 0.6951
12 L H 1.3550
13 V H -0.0871
14 K H -1.7939
15 P H -1.6823
16 S H -1.7104
17 Q H -1.8113
18 T H -0.7997
19 L H 0.0000
20 F H 1.5279
21 L H 0.0000
22 T H 0.0000
23 C H 0.0000
24 T H -1.3937
25 V H 0.0000
26 S H -1.1611
27 G H -0.6992
28 F H -0.1677
29 S H -0.4636
30 L H 0.0000
35 T H -0.7211
36 S H -0.5583
37 Y H -0.3216
38 S H 0.0000
39 V H 0.0000
40 N H 0.0000
41 W H 0.0000
42 V H 0.0000
43 R H -0.2595
44 Q H -0.4414
45 T H -0.6964
46 P H -0.7090
47 G H -0.9535
48 K H -1.0440
49 M H -0.3320
50 L H 0.0000
51 E H -0.5018
52 C H 0.0000
53 L H 0.0000
54 G H 0.0000
55 G H 0.0000
56 I H 0.0000
57 A H 0.0000
58 T H -0.9570
59 S H -0.7952
63 G H -0.6833
64 S H -0.4875
65 T H -0.4009
66 G H -0.5061
67 Y H -0.5346
68 N H 0.0000
69 P H 0.0064
70 V H 1.0404
71 L H 0.0000
72 K H -1.6703
74 S H -1.2730
75 R H -1.5394
76 L H -1.6543
77 R H -1.9540
78 I H 0.0000
79 T H -0.9986
80 K H -1.3817
81 D H -1.9665
82 N H -2.3076
83 S H -1.9553
84 K H -2.4937
85 S H -1.8091
86 Q H -1.6596
87 V H 0.0000
88 S H 0.0000
89 L H 0.0000
90 S H 0.0000
91 V H 0.0000
92 S H -1.2144
93 N H -2.0672
94 V H 0.0000
95 T H -1.5794
96 P H -1.4950
97 E H -2.0035
98 D H 0.0000
99 T H -0.3331
100 A H 0.0000
101 T H 0.3415
102 Y H 0.0000
103 Y H 0.0000
104 C H 0.0000
105 A H 0.0000
106 K H 0.0000
107 W H -0.1379
108 S H -0.3057
109 S H -0.6972
110 R H -1.7973
111 G H -0.9841
111A G H 0.0000
111B Y H -0.0514
111C D H -0.2875
111D C H 0.0000
111E G H 0.0819
112E V H 0.0000
112D H H 0.0000
112C S H 0.0000
112B S H -0.3346
112A D H -1.3675
112 Y H -0.0439
113 S H 0.0000
114 Y H -0.4504
115 L H -0.1984
116 D H -0.8849
117 A H -0.4549
118 W H -0.5290
119 G H 0.0000
120 Q H -1.8194
121 G H -0.6603
122 L H 0.2149
123 L H 1.6348
124 V H 0.0000
125 T H 0.4014
126 V H 0.0000
127 S H -0.8159
128 S H -0.7703
2 A L 0.7442
3 V L 1.7949
4 L L 0.8304
5 T L 0.1168
6 Q L -0.2634
7 P L -0.3729
8 S L -0.3937
9 S L -0.3076
11 V L 0.0847
12 S L 0.0653
13 A L 0.0109
14 S L 0.2600
15 L L 0.3217
16 G L -1.0612
17 Q L -1.8564
18 R L -2.4123
19 V L 0.0000
20 S L -0.7648
21 I L 0.0000
22 T L -0.4562
23 C L 0.0000
24 S L -0.6525
25 G L -0.3156
26 S L -0.6545
27 S L -0.8777
28 S L -0.3430
29 N L 0.0000
30 I L 0.0000
35 G L -2.0434
36 R L -1.8364
37 Y L -1.0098
38 G L -1.3978
39 A L 0.0000
40 T L 0.0000
41 W L 0.0000
42 Y L 0.0000
43 Q L 0.0000
44 Q L 0.0000
45 V L 0.2879
46 P L -0.1341
47 G L -0.5120
48 S L -0.5130
49 G L 0.0000
50 L L 0.0000
51 R L -0.6494
52 T L 0.0000
53 I L 0.0000
54 I L 0.0000
55 Y L 0.0000
56 G L -1.5673
57 S L 0.0000
65 S L -2.1202
66 R L -2.9837
67 R L -3.1651
68 P L 0.0000
69 S L -1.4760
70 G L -1.1943
71 V L 0.0000
72 P L -1.5153
74 D L -2.4487
75 R L -1.7422
76 F L 0.0000
77 S L -1.4870
78 G L 0.0000
79 S L -1.5045
80 K L -2.2572
83 S L -1.6448
84 G L -1.7572
85 N L -1.9159
86 T L -1.2910
87 V L 0.0000
88 T L -0.6602
89 L L 0.0000
90 T L -0.7140
91 I L 0.0000
92 S L -1.5737
93 S L -1.3975
94 L L 0.0000
95 Q L -1.3375
96 P L -1.2302
97 E L -2.1686
98 D L 0.0000
99 E L -1.2501
100 A L 0.0000
101 D L -0.3005
102 Y L 0.0000
103 F L 0.0000
104 C L 0.0000
105 A L 0.0000
106 A L 0.0000
107 Y L 0.2125
108 D L 0.4886
109 I L 1.0984
113 S L 0.5966
114 T L 0.3826
115 N L 0.1733
116 A L 0.0000
117 V L 0.0000
118 F L 0.0000
119 G L 0.0000
120 S L -0.1535
121 G L 0.0000
122 T L 0.0000
123 T L -0.3148
124 L L 0.0000
125 T L 0.1162
126 L L 0.5222
127 L L 1.7362
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Laboratory of Theory of Biopolymers 2018