| Chain sequence(s) |
H: QVQLRESGPSLVKPSQTLFLTCTVSGFSLTSYSVNWVRQTPGKMLECLGGIATSGSTGYNPVLKSRLRITKDNSKSQVSLSVSNVTPEDTATYYCAKWSSRGGYDCGVHSSDYSYLDAWGQGLLVTVSS
L: AVLTQPSSVSASLGQRVSITCSGSSSNIGRYGATWYQQVPGSGLRTIIYGSSRRPSGVPDRFSGSKSGNTVTLTISSLQPEDEADYFCAAYDISTNAVFGSGTTLTLL input PDB |
| Selected Chain(s) | H,L |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:02:15)
[INFO] Main: Simulation completed successfully. (00:02:17)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | H | -1.1291 | |
| 2 | V | H | -0.3136 | |
| 3 | Q | H | -1.6468 | |
| 4 | L | H | 0.0000 | |
| 5 | R | H | -2.5318 | |
| 6 | E | H | -1.6082 | |
| 7 | S | H | -0.6136 | |
| 8 | G | H | 0.3031 | |
| 9 | P | H | 0.7000 | |
| 11 | S | H | 0.6951 | |
| 12 | L | H | 1.3550 | |
| 13 | V | H | -0.0871 | |
| 14 | K | H | -1.7939 | |
| 15 | P | H | -1.6823 | |
| 16 | S | H | -1.7104 | |
| 17 | Q | H | -1.8113 | |
| 18 | T | H | -0.7997 | |
| 19 | L | H | 0.0000 | |
| 20 | F | H | 1.5279 | |
| 21 | L | H | 0.0000 | |
| 22 | T | H | 0.0000 | |
| 23 | C | H | 0.0000 | |
| 24 | T | H | -1.3937 | |
| 25 | V | H | 0.0000 | |
| 26 | S | H | -1.1611 | |
| 27 | G | H | -0.6992 | |
| 28 | F | H | -0.1677 | |
| 29 | S | H | -0.4636 | |
| 30 | L | H | 0.0000 | |
| 35 | T | H | -0.7211 | |
| 36 | S | H | -0.5583 | |
| 37 | Y | H | -0.3216 | |
| 38 | S | H | 0.0000 | |
| 39 | V | H | 0.0000 | |
| 40 | N | H | 0.0000 | |
| 41 | W | H | 0.0000 | |
| 42 | V | H | 0.0000 | |
| 43 | R | H | -0.2595 | |
| 44 | Q | H | -0.4414 | |
| 45 | T | H | -0.6964 | |
| 46 | P | H | -0.7090 | |
| 47 | G | H | -0.9535 | |
| 48 | K | H | -1.0440 | |
| 49 | M | H | -0.3320 | |
| 50 | L | H | 0.0000 | |
| 51 | E | H | -0.5018 | |
| 52 | C | H | 0.0000 | |
| 53 | L | H | 0.0000 | |
| 54 | G | H | 0.0000 | |
| 55 | G | H | 0.0000 | |
| 56 | I | H | 0.0000 | |
| 57 | A | H | 0.0000 | |
| 58 | T | H | -0.9570 | |
| 59 | S | H | -0.7952 | |
| 63 | G | H | -0.6833 | |
| 64 | S | H | -0.4875 | |
| 65 | T | H | -0.4009 | |
| 66 | G | H | -0.5061 | |
| 67 | Y | H | -0.5346 | |
| 68 | N | H | 0.0000 | |
| 69 | P | H | 0.0064 | |
| 70 | V | H | 1.0404 | |
| 71 | L | H | 0.0000 | |
| 72 | K | H | -1.6703 | |
| 74 | S | H | -1.2730 | |
| 75 | R | H | -1.5394 | |
| 76 | L | H | -1.6543 | |
| 77 | R | H | -1.9540 | |
| 78 | I | H | 0.0000 | |
| 79 | T | H | -0.9986 | |
| 80 | K | H | -1.3817 | |
| 81 | D | H | -1.9665 | |
| 82 | N | H | -2.3076 | |
| 83 | S | H | -1.9553 | |
| 84 | K | H | -2.4937 | |
| 85 | S | H | -1.8091 | |
| 86 | Q | H | -1.6596 | |
| 87 | V | H | 0.0000 | |
| 88 | S | H | 0.0000 | |
| 89 | L | H | 0.0000 | |
| 90 | S | H | 0.0000 | |
| 91 | V | H | 0.0000 | |
| 92 | S | H | -1.2144 | |
| 93 | N | H | -2.0672 | |
| 94 | V | H | 0.0000 | |
| 95 | T | H | -1.5794 | |
| 96 | P | H | -1.4950 | |
| 97 | E | H | -2.0035 | |
| 98 | D | H | 0.0000 | |
| 99 | T | H | -0.3331 | |
| 100 | A | H | 0.0000 | |
| 101 | T | H | 0.3415 | |
| 102 | Y | H | 0.0000 | |
| 103 | Y | H | 0.0000 | |
| 104 | C | H | 0.0000 | |
| 105 | A | H | 0.0000 | |
| 106 | K | H | 0.0000 | |
| 107 | W | H | -0.1379 | |
| 108 | S | H | -0.3057 | |
| 109 | S | H | -0.6972 | |
| 110 | R | H | -1.7973 | |
| 111 | G | H | -0.9841 | |
| 111A | G | H | 0.0000 | |
| 111B | Y | H | -0.0514 | |
| 111C | D | H | -0.2875 | |
| 111D | C | H | 0.0000 | |
| 111E | G | H | 0.0819 | |
| 112E | V | H | 0.0000 | |
| 112D | H | H | 0.0000 | |
| 112C | S | H | 0.0000 | |
| 112B | S | H | -0.3346 | |
| 112A | D | H | -1.3675 | |
| 112 | Y | H | -0.0439 | |
| 113 | S | H | 0.0000 | |
| 114 | Y | H | -0.4504 | |
| 115 | L | H | -0.1984 | |
| 116 | D | H | -0.8849 | |
| 117 | A | H | -0.4549 | |
| 118 | W | H | -0.5290 | |
| 119 | G | H | 0.0000 | |
| 120 | Q | H | -1.8194 | |
| 121 | G | H | -0.6603 | |
| 122 | L | H | 0.2149 | |
| 123 | L | H | 1.6348 | |
| 124 | V | H | 0.0000 | |
| 125 | T | H | 0.4014 | |
| 126 | V | H | 0.0000 | |
| 127 | S | H | -0.8159 | |
| 128 | S | H | -0.7703 | |
| 2 | A | L | 0.7442 | |
| 3 | V | L | 1.7949 | |
| 4 | L | L | 0.8304 | |
| 5 | T | L | 0.1168 | |
| 6 | Q | L | -0.2634 | |
| 7 | P | L | -0.3729 | |
| 8 | S | L | -0.3937 | |
| 9 | S | L | -0.3076 | |
| 11 | V | L | 0.0847 | |
| 12 | S | L | 0.0653 | |
| 13 | A | L | 0.0109 | |
| 14 | S | L | 0.2600 | |
| 15 | L | L | 0.3217 | |
| 16 | G | L | -1.0612 | |
| 17 | Q | L | -1.8564 | |
| 18 | R | L | -2.4123 | |
| 19 | V | L | 0.0000 | |
| 20 | S | L | -0.7648 | |
| 21 | I | L | 0.0000 | |
| 22 | T | L | -0.4562 | |
| 23 | C | L | 0.0000 | |
| 24 | S | L | -0.6525 | |
| 25 | G | L | -0.3156 | |
| 26 | S | L | -0.6545 | |
| 27 | S | L | -0.8777 | |
| 28 | S | L | -0.3430 | |
| 29 | N | L | 0.0000 | |
| 30 | I | L | 0.0000 | |
| 35 | G | L | -2.0434 | |
| 36 | R | L | -1.8364 | |
| 37 | Y | L | -1.0098 | |
| 38 | G | L | -1.3978 | |
| 39 | A | L | 0.0000 | |
| 40 | T | L | 0.0000 | |
| 41 | W | L | 0.0000 | |
| 42 | Y | L | 0.0000 | |
| 43 | Q | L | 0.0000 | |
| 44 | Q | L | 0.0000 | |
| 45 | V | L | 0.2879 | |
| 46 | P | L | -0.1341 | |
| 47 | G | L | -0.5120 | |
| 48 | S | L | -0.5130 | |
| 49 | G | L | 0.0000 | |
| 50 | L | L | 0.0000 | |
| 51 | R | L | -0.6494 | |
| 52 | T | L | 0.0000 | |
| 53 | I | L | 0.0000 | |
| 54 | I | L | 0.0000 | |
| 55 | Y | L | 0.0000 | |
| 56 | G | L | -1.5673 | |
| 57 | S | L | 0.0000 | |
| 65 | S | L | -2.1202 | |
| 66 | R | L | -2.9837 | |
| 67 | R | L | -3.1651 | |
| 68 | P | L | 0.0000 | |
| 69 | S | L | -1.4760 | |
| 70 | G | L | -1.1943 | |
| 71 | V | L | 0.0000 | |
| 72 | P | L | -1.5153 | |
| 74 | D | L | -2.4487 | |
| 75 | R | L | -1.7422 | |
| 76 | F | L | 0.0000 | |
| 77 | S | L | -1.4870 | |
| 78 | G | L | 0.0000 | |
| 79 | S | L | -1.5045 | |
| 80 | K | L | -2.2572 | |
| 83 | S | L | -1.6448 | |
| 84 | G | L | -1.7572 | |
| 85 | N | L | -1.9159 | |
| 86 | T | L | -1.2910 | |
| 87 | V | L | 0.0000 | |
| 88 | T | L | -0.6602 | |
| 89 | L | L | 0.0000 | |
| 90 | T | L | -0.7140 | |
| 91 | I | L | 0.0000 | |
| 92 | S | L | -1.5737 | |
| 93 | S | L | -1.3975 | |
| 94 | L | L | 0.0000 | |
| 95 | Q | L | -1.3375 | |
| 96 | P | L | -1.2302 | |
| 97 | E | L | -2.1686 | |
| 98 | D | L | 0.0000 | |
| 99 | E | L | -1.2501 | |
| 100 | A | L | 0.0000 | |
| 101 | D | L | -0.3005 | |
| 102 | Y | L | 0.0000 | |
| 103 | F | L | 0.0000 | |
| 104 | C | L | 0.0000 | |
| 105 | A | L | 0.0000 | |
| 106 | A | L | 0.0000 | |
| 107 | Y | L | 0.2125 | |
| 108 | D | L | 0.4886 | |
| 109 | I | L | 1.0984 | |
| 113 | S | L | 0.5966 | |
| 114 | T | L | 0.3826 | |
| 115 | N | L | 0.1733 | |
| 116 | A | L | 0.0000 | |
| 117 | V | L | 0.0000 | |
| 118 | F | L | 0.0000 | |
| 119 | G | L | 0.0000 | |
| 120 | S | L | -0.1535 | |
| 121 | G | L | 0.0000 | |
| 122 | T | L | 0.0000 | |
| 123 | T | L | -0.3148 | |
| 124 | L | L | 0.0000 | |
| 125 | T | L | 0.1162 | |
| 126 | L | L | 0.5222 | |
| 127 | L | L | 1.7362 |