Project name: apolipoprotein

Status: done

Started: 2025-07-27 19:39:50
Settings
Chain sequence(s) A: MLKLLDNWDSVTSTFSKLREQLGPVTQEFWDNLEKETEGLRQEMSKDLEEVKAKVQPYLDDFQKKWQEEMELYRQKVEPLRAELQEGARQKLHELQEKLSPLGEEMRDRARAHVDALRTHLAPYSDELRQRLAARLEALKENGGARLAEYHAKATEHLSTLSEKAKPALEDLRQGLLPVLESFKVSFLSALEEYTKKLNTQ
C: MLKLLDNWDSVTSTFSKLREQLGPVTQEFWDNLEKETEGLRQEMSKDLEEVKAKVQPYLDDFQKKWQEEMELYRQKVEPLRAELQEGARQKLHELQEKLSPLGEEMRDRARAHVDALRTHLAPYSDELRQRLAARLEALKENGGARLAEYHAKATEHLSTLSEKAKPALEDLRQGLLPVLESFKVSFLSALEEYTKKLNTQ
B: MLKLLDNWDSVTSTFSKLREQLGPVTQEFWDNLEKETEGLRQEMSKDLEEVKAKVQPYLDDFQKKWQEEMELYRQKVEPLRAELQEGARQKLHELQEKLSPLGEEMRDRARAHVDALRTHLAPYSDELRQRLAARLEALKENGGARLAEYHAKATEHLSTLSEKAKPALEDLRQGLLPVLESFKVSFLSALEEYTKKLNTQ
D: MLKLLDNWDSVTSTFSKLREQLGPVTQEFWDNLEKETEGLRQEMSKDLEEVKAKVQPYLDDFQKKWQEEMELYRQKVEPLRAELQEGARQKLHELQEKLSPLGEEMRDRARAHVDALRTHLAPYSDELRQRLAARLEALKENGGARLAEYHAKATEHLSTLSEKAKPALEDLRQGLLPVLESFKVSFLSALEEYTKKLNTQ
input PDB
Selected Chain(s) A,C,B,D
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:43:32)
[INFO]       Main:     Simulation completed successfully.                                          (00:43:46)
Show buried residues

Minimal score value
-5.1735
Maximal score value
1.3579
Average score
-1.8844
Total score value
-1515.0624

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
43 M A 0.9165
44 L A 0.4988
45 K A -0.6075
46 L A -0.3280
47 L A 0.3690
48 D A -0.6010
49 N A -0.6928
50 W A 0.3686
51 D A -0.7084
52 S A -0.5071
53 V A 0.0000
54 T A -0.5824
55 S A -0.5679
56 T A 0.0000
57 F A 0.0000
58 S A -1.6766
59 K A -2.1566
60 L A 0.0000
61 R A -2.1400
62 E A -2.8014
63 Q A -2.2761
64 L A 0.0000
65 G A -1.4276
66 P A -1.2014
67 V A 0.0000
68 T A -1.1696
69 Q A -2.0108
70 E A -2.1031
71 F A 0.0000
72 W A -1.6940
73 D A -3.0010
74 N A -2.3310
75 L A -1.9321
76 E A -2.5361
77 K A -3.0581
78 E A -2.2541
79 T A -2.0656
80 E A -2.4350
81 G A -2.3072
82 L A 0.0000
83 R A -2.5208
84 Q A -3.0305
85 E A -3.1815
86 M A -2.5962
87 S A -2.4700
88 K A -3.6433
89 D A -3.1426
90 L A 0.0000
91 E A -3.1379
92 E A -3.5291
93 V A 0.0000
94 K A -2.2516
95 A A -2.3729
96 K A -2.6867
97 V A 0.0000
98 Q A -2.2570
99 P A -1.7867
100 Y A -1.4776
101 L A -1.8864
102 D A -2.4807
103 D A -3.0659
104 F A -2.5602
105 Q A -2.9883
106 K A -3.8045
107 K A -3.0232
108 W A -2.2803
109 Q A -2.6965
110 E A -2.8786
111 E A -1.9797
112 M A -1.8940
113 E A -2.6624
114 L A -1.4054
115 Y A 0.0000
116 R A -3.2858
117 Q A -2.9084
118 K A -2.1291
119 V A 0.0000
120 E A -3.1251
121 P A -1.9938
122 L A -1.6823
123 R A -2.0981
124 A A -2.3389
125 E A -2.6572
126 L A -2.0328
127 Q A -2.7945
128 E A -3.5159
129 G A -2.6496
130 A A -2.4025
131 R A -3.5881
132 Q A -3.5729
133 K A -3.0944
134 L A 0.0000
135 H A -3.6303
136 E A -4.0345
137 L A 0.0000
138 Q A -3.1261
139 E A -3.7382
140 K A -3.3229
141 L A -2.1067
142 S A -1.8846
143 P A -1.8709
144 L A -2.1141
145 G A -2.4142
146 E A -4.1189
147 E A -3.7167
148 M A -3.0192
149 R A -4.5182
150 D A -5.0644
151 R A -4.3675
152 A A 0.0000
153 R A -3.8653
154 A A -2.4431
155 H A -1.9527
156 V A 0.0000
157 D A -1.9463
158 A A -1.3137
159 L A 0.0000
160 R A -2.3182
161 T A -1.3944
162 H A -1.1077
163 L A 0.0000
164 A A -1.4703
165 P A -1.5741
166 Y A -1.7384
167 S A -2.2468
168 D A -3.4705
169 E A -3.2702
170 L A 0.0000
171 R A -3.3617
172 Q A -3.2532
173 R A -3.0959
174 L A -1.6902
175 A A -1.7456
176 A A -1.7314
177 R A -2.0399
178 L A -1.6806
179 E A -2.7277
180 A A -2.0632
181 L A 0.0000
182 K A -2.4396
183 E A -2.9236
184 N A -2.0025
185 G A -1.6320
186 G A -1.4483
187 A A -1.2545
188 R A 0.0000
189 L A 0.0000
190 A A -1.1761
191 E A -2.1019
192 Y A 0.0000
193 H A -1.3332
194 A A -1.4907
195 K A -1.8773
196 A A 0.0000
197 T A -1.3863
198 E A -2.1457
199 H A -1.4563
200 L A -1.4736
201 S A -1.8052
202 T A -1.2402
203 L A -1.5482
204 S A -1.9991
205 E A -2.7174
206 K A -2.0881
207 A A -1.7569
208 K A -2.9849
209 P A -2.2334
210 A A -2.1206
211 L A -2.2391
212 E A -3.0074
213 D A -3.4391
214 L A -2.2522
215 R A -2.0462
216 Q A -1.9987
217 G A -1.4511
218 L A 0.0000
219 L A -0.4083
220 P A -0.1317
221 V A 0.7978
222 L A 0.5956
223 E A -1.1353
224 S A -0.6302
225 F A -0.2475
226 K A -1.2235
227 V A -0.2496
228 S A -0.6752
229 F A -0.7349
230 L A -0.6386
231 S A -1.3865
232 A A -1.6036
233 L A -1.5714
234 E A -3.0377
235 E A -3.4471
236 Y A 0.0000
237 T A 0.0000
238 K A -3.7647
239 K A -3.3946
240 L A 0.0000
241 N A -2.6219
242 T A -2.1541
243 Q A -2.1608
43 M B 1.3164
44 L B 1.2399
45 K B 0.4147
46 L B 0.0000
47 L B 0.1031
48 D B -2.0519
49 N B 0.0000
50 W B -0.7629
51 D B -2.3034
52 S B -1.3039
53 V B 0.0000
54 T B -0.9934
55 S B -0.9440
56 T B -0.7929
57 F B 0.0000
58 S B -1.7030
59 K B -2.0447
60 L B -1.5588
61 R B -2.2294
62 E B -2.8535
63 Q B -2.0694
64 L B -1.5777
65 G B -1.4455
66 P B -1.5936
67 V B 0.0000
68 T B -1.1218
69 Q B -2.0118
70 E B -2.0964
71 F B -1.4787
72 W B -1.5314
73 D B -3.0249
74 N B -2.2935
75 L B 0.0000
76 E B -2.6756
77 K B -3.1702
78 E B -2.4715
79 T B 0.0000
80 E B -2.6665
81 G B -2.4626
82 L B -2.4025
83 R B -2.7563
84 Q B -3.0921
85 E B -3.2481
86 M B 0.0000
87 S B -2.4286
88 K B -3.7556
89 D B 0.0000
90 L B 0.0000
91 E B -3.6107
92 E B -3.7716
93 V B 0.0000
94 K B -3.1933
95 A B -2.6022
96 K B -2.7984
97 V B 0.0000
98 Q B -2.3121
99 P B -1.8565
100 Y B -1.2598
101 L B -1.5429
102 D B -2.8282
103 D B -3.0967
104 F B -2.4706
105 Q B -3.1656
106 K B -3.9782
107 K B -3.4416
108 W B -2.7316
109 Q B -3.3882
110 E B -3.6673
111 E B -2.6959
112 M B -2.3416
113 E B -3.6173
114 L B -2.4174
115 Y B 0.0000
116 R B -3.5789
117 Q B -3.4412
118 K B -3.1364
119 V B 0.0000
120 E B -2.2756
121 P B -1.6759
122 L B -1.2513
123 R B -1.3784
124 A B -1.7595
125 E B -2.5299
126 L B -1.9071
127 Q B -2.4233
128 E B -3.3905
129 G B -2.5694
130 A B -2.2691
131 R B -3.0019
132 Q B -3.2744
133 K B -3.1178
134 L B -2.8469
135 H B -3.7259
136 E B -4.1509
137 L B 0.0000
138 Q B -3.2356
139 E B -4.0141
140 K B -3.6161
141 L B 0.0000
142 S B -2.5924
143 P B -2.2642
144 L B -2.2725
145 G B -2.9915
146 E B -4.2421
147 E B -3.9744
148 M B 0.0000
149 R B -4.7818
150 D B -5.0922
151 R B -4.3836
152 A B -3.0239
153 R B -3.1118
154 A B -2.1535
155 H B -1.5150
156 V B 0.0000
157 D B -1.2965
158 A B -0.9973
159 L B 0.0000
160 R B -1.9774
161 T B -1.0803
162 H B -1.2023
163 L B 0.0000
164 A B -1.4355
165 P B -1.1576
166 Y B -1.1187
167 S B -1.7352
168 D B -2.3189
169 E B -2.8524
170 L B -2.2463
171 R B 0.0000
172 Q B -2.6888
173 R B -3.0824
174 L B 0.0000
175 A B -1.8498
176 A B -1.6854
177 R B -2.0889
178 L B -1.8405
179 E B -2.7584
180 A B -2.0178
181 L B -1.6283
182 K B -2.4348
183 E B -3.0460
184 N B -1.9617
185 G B -1.6537
186 G B -1.4960
187 A B -1.4783
188 R B -2.0432
189 L B 0.0000
190 A B -1.4380
191 E B -2.4305
192 Y B 0.0000
193 H B -1.6850
194 A B -1.6331
195 K B -1.8705
196 A B 0.0000
197 T B -1.5553
198 E B -2.1963
199 H B -1.4878
200 L B -1.4553
201 S B -1.5619
202 T B -1.4274
203 L B 0.0000
204 S B -1.9438
205 E B -2.6699
206 K B -2.2526
207 A B -2.2424
208 K B -3.1412
209 P B -2.6752
210 A B -2.4747
211 L B -2.9509
212 E B -4.0979
213 D B -3.9930
214 L B -3.0659
215 R B -3.7728
216 Q B -2.9836
217 G B -1.8761
218 L B 0.0000
219 L B -0.8851
220 P B 0.3270
221 V B 1.3579
222 L B 0.7587
223 E B -0.5895
224 S B -0.7275
225 F B -0.5067
226 K B -1.0862
227 V B -0.4742
228 S B -0.7793
229 F B -0.9153
230 L B 0.0000
231 S B -1.1940
232 A B -1.7002
233 L B 0.0000
234 E B -3.1814
235 E B -3.3530
236 Y B 0.0000
237 T B -3.1000
238 K B -3.9743
239 K B -3.4004
240 L B 0.0000
241 N B -2.7044
242 T B -1.9311
243 Q B -2.1191
43 M C 0.8622
44 L C 0.4075
45 K C -0.6050
46 L C -0.2467
47 L C 0.5467
48 D C -0.3969
49 N C -0.1904
50 W C 0.6281
51 D C -0.5449
52 S C -0.3693
53 V C 0.0000
54 T C -0.3228
55 S C -0.4264
56 T C -0.5005
57 F C 0.0000
58 S C -1.3743
59 K C -1.5471
60 L C 0.0000
61 R C -2.1454
62 E C -2.7420
63 Q C -2.2612
64 L C -1.4708
65 G C -1.4341
66 P C -1.2954
67 V C 0.0000
68 T C -1.1833
69 Q C -2.0535
70 E C -2.1839
71 F C 0.0000
72 W C -1.7533
73 D C -3.0313
74 N C -2.2850
75 L C -2.0142
76 E C -2.7426
77 K C -3.1552
78 E C -2.2768
79 T C -2.2313
80 E C -2.9510
81 G C -2.4864
82 L C -2.3199
83 R C -2.7513
84 Q C -3.2202
85 E C -3.5027
86 M C 0.0000
87 S C -2.8166
88 K C -4.0531
89 D C -3.5477
90 L C 0.0000
91 E C -4.0069
92 E C -3.8826
93 V C -2.6844
94 K C -2.4805
95 A C -2.5517
96 K C -2.7480
97 V C 0.0000
98 Q C -2.1938
99 P C -1.7582
100 Y C -1.4439
101 L C -1.8089
102 D C -2.4162
103 D C -2.8983
104 F C -2.5110
105 Q C -2.9677
106 K C -3.7729
107 K C -3.0153
108 W C -2.3259
109 Q C -2.7577
110 E C -3.0327
111 E C 0.0000
112 M C -1.9942
113 E C -2.9258
114 L C -1.5038
115 Y C 0.0000
116 R C -3.4227
117 Q C -3.0873
118 K C -2.2230
119 V C -2.0523
120 E C -3.5069
121 P C -2.1523
122 L C -1.7401
123 R C -2.1290
124 A C -2.4237
125 E C -2.6610
126 L C -2.0999
127 Q C -2.9218
128 E C -3.6241
129 G C -2.7163
130 A C -2.6192
131 R C -4.2486
132 Q C -3.8580
133 K C -3.2456
134 L C -3.4604
135 H C -3.9930
136 E C -4.4748
137 L C 0.0000
138 Q C -3.3868
139 E C -3.9512
140 K C -3.5094
141 L C -2.2731
142 S C -2.1044
143 P C -2.1582
144 L C 0.0000
145 G C -2.7858
146 E C -4.4670
147 E C -4.4667
148 M C -3.4418
149 R C -4.6841
150 D C -5.1735
151 R C -4.7048
152 A C -3.3834
153 R C -3.9042
154 A C -2.5174
155 H C -2.1083
156 V C 0.0000
157 D C -2.0348
158 A C -1.3627
159 L C 0.0000
160 R C -2.2248
161 T C -1.3915
162 H C -1.0773
163 L C 0.0000
164 A C -1.5723
165 P C -1.6673
166 Y C -1.9817
167 S C -2.6309
168 D C -3.8462
169 E C -3.7869
170 L C 0.0000
171 R C -3.9319
172 Q C -3.5957
173 R C -3.5256
174 L C -1.9973
175 A C -1.9605
176 A C -1.8940
177 R C -2.1277
178 L C 0.0000
179 E C -2.7425
180 A C -2.0608
181 L C 0.0000
182 K C -2.2889
183 E C -2.8445
184 N C -1.9153
185 G C -1.5517
186 G C -1.3843
187 A C -1.2212
188 R C 0.0000
189 L C 0.0000
190 A C -1.1532
191 E C -2.1031
192 Y C 0.0000
193 H C -1.3199
194 A C -1.4427
195 K C -1.8091
196 A C 0.0000
197 T C -1.3577
198 E C -2.1241
199 H C -1.3449
200 L C -1.3720
201 S C -1.7828
202 T C -1.3167
203 L C -1.5255
204 S C -1.9903
205 E C -2.7183
206 K C -2.0842
207 A C -1.8107
208 K C -3.0225
209 P C -2.3428
210 A C -2.3599
211 L C -2.6468
212 E C -3.7970
213 D C -4.1072
214 L C 0.0000
215 R C -3.5369
216 Q C -2.9801
217 G C -2.0528
218 L C 0.0000
219 L C -0.7474
220 P C -0.2985
221 V C 0.7497
222 L C 0.5626
223 E C -1.0067
224 S C -0.4283
225 F C 0.1711
226 K C -1.0403
227 V C -0.2056
228 S C -0.5831
229 F C -0.6907
230 L C -0.6094
231 S C -1.4126
232 A C 0.0000
233 L C -1.5517
234 E C -3.0497
235 E C -3.3794
236 Y C -2.3618
237 T C -2.4336
238 K C -3.6676
239 K C -3.2193
240 L C -2.1262
241 N C -2.5248
242 T C -2.0872
243 Q C -2.0944
43 M D 1.1938
44 L D 0.9693
45 K D 0.2914
46 L D -0.4308
47 L D -0.0654
48 D D -2.1889
49 N D -1.5356
50 W D -0.8650
51 D D -2.3583
52 S D -1.3618
53 V D 0.0000
54 T D -1.0463
55 S D -1.0764
56 T D -0.9042
57 F D 0.0000
58 S D -1.6830
59 K D -2.3329
60 L D -1.5261
61 R D -2.0559
62 E D -2.7391
63 Q D -1.7899
64 L D -1.4197
65 G D -1.3317
66 P D -1.5356
67 V D 0.0000
68 T D -1.2157
69 Q D -2.0913
70 E D -2.2249
71 F D 0.0000
72 W D -1.6280
73 D D -3.1007
74 N D -2.3659
75 L D 0.0000
76 E D -2.6793
77 K D -3.2056
78 E D -2.4051
79 T D 0.0000
80 E D -2.7083
81 G D -2.3887
82 L D -2.1911
83 R D -2.5762
84 Q D -2.8596
85 E D -2.8066
86 M D 0.0000
87 S D -2.3061
88 K D -3.5369
89 D D -2.8809
90 L D -2.0527
91 E D -3.5894
92 E D -3.7441
93 V D -2.6257
94 K D -3.1154
95 A D -2.5165
96 K D -2.6995
97 V D 0.0000
98 Q D -1.9700
99 P D -1.6636
100 Y D -1.0827
101 L D -1.3315
102 D D -2.5341
103 D D -2.9931
104 F D -2.4404
105 Q D -3.2838
106 K D -4.0545
107 K D -3.6151
108 W D -2.7475
109 Q D -3.3928
110 E D -3.6155
111 E D 0.0000
112 M D -2.2507
113 E D -3.3998
114 L D -2.1554
115 Y D 0.0000
116 R D -3.3732
117 Q D -3.2924
118 K D -2.8801
119 V D -2.1041
120 E D -2.4070
121 P D -1.7412
122 L D -1.3257
123 R D -1.5050
124 A D -1.8312
125 E D -2.6286
126 L D 0.0000
127 Q D -2.4073
128 E D -3.4173
129 G D -2.6093
130 A D -2.2938
131 R D -3.0604
132 Q D -3.2445
133 K D -3.0347
134 L D -2.6798
135 H D -3.5647
136 E D -4.0542
137 L D 0.0000
138 Q D -3.1012
139 E D -3.9389
140 K D -3.5773
141 L D 0.0000
142 S D -2.5884
143 P D -2.2974
144 L D -2.3052
145 G D -3.0688
146 E D -4.2454
147 E D -3.9617
148 M D 0.0000
149 R D -4.6421
150 D D -4.7756
151 R D -4.0271
152 A D -2.6477
153 R D -2.4687
154 A D -1.8491
155 H D -1.3586
156 V D 0.0000
157 D D -1.2815
158 A D -0.9443
159 L D 0.0000
160 R D -1.6606
161 T D -1.0217
162 H D -1.1691
163 L D 0.0000
164 A D -0.9979
165 P D -0.7792
166 Y D -0.6882
167 S D 0.0000
168 D D -1.6355
169 E D -1.8697
170 L D 0.0000
171 R D -2.2354
172 Q D -2.4670
173 R D -2.7231
174 L D -1.7628
175 A D -1.7669
176 A D -1.5599
177 R D -1.8997
178 L D -1.7101
179 E D -2.7532
180 A D -2.0243
181 L D -1.6659
182 K D -2.5944
183 E D -3.1048
184 N D -1.9555
185 G D -1.6002
186 G D -1.4310
187 A D -1.3455
188 R D -1.7354
189 L D -1.2013
190 A D -1.3310
191 E D -2.4126
192 Y D 0.0000
193 H D -1.6533
194 A D -1.7042
195 K D -2.0970
196 A D 0.0000
197 T D -1.6483
198 E D -2.2702
199 H D -1.5419
200 L D 0.0000
201 S D -1.7177
202 T D -1.6217
203 L D 0.0000
204 S D -2.2432
205 E D -3.0274
206 K D -2.7555
207 A D -2.5019
208 K D -3.2515
209 P D -2.7072
210 A D -2.4577
211 L D -2.6065
212 E D -3.8450
213 D D -3.8119
214 L D -2.7535
215 R D -3.2243
216 Q D -2.7544
217 G D -1.7343
218 L D 0.0000
219 L D -0.8031
220 P D 0.2383
221 V D 1.3169
222 L D 0.6972
223 E D -0.5934
224 S D -0.6270
225 F D -0.0381
226 K D -1.1156
227 V D -0.5083
228 S D -0.6889
229 F D -0.7695
230 L D 0.0000
231 S D -1.0669
232 A D -1.5139
233 L D 0.0000
234 E D -2.6532
235 E D -3.1459
236 Y D 0.0000
237 T D -2.7525
238 K D -3.6863
239 K D -3.1415
240 L D -2.3724
241 N D -2.6061
242 T D -1.8417
243 Q D -2.0353
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Laboratory of Theory of Biopolymers 2018