Project name: query_structure

Status: done

Started: 2026-03-16 23:16:49
Settings
Chain sequence(s) A: GAMGNVNCGGVPCKFGCCREDRCREIDCD
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:18)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:19)
Show buried residues

Minimal score value
-4.4003
Maximal score value
0.3435
Average score
-1.5434
Total score value
-44.7587

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 G A -0.2426
2 A A 0.0169
3 M A 0.3435
4 G A -0.2866
5 N A -0.8044
6 V A -0.0153
7 N A -1.1081
8 C A -1.2536
9 G A -1.3558
10 G A -2.4283
11 V A -1.8979
12 P A -1.0078
13 C A 0.0000
14 K A -1.0181
15 F A 0.3204
16 G A -0.7439
17 C A -1.3104
18 C A -2.4799
19 R A -4.0323
20 E A -4.2997
21 D A -4.4003
22 R A -4.2140
23 C A -2.7514
24 R A -3.0412
25 E A -1.7815
26 I A -0.3452
27 D A -1.5815
28 C A -1.2220
29 D A -1.8177
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Laboratory of Theory of Biopolymers 2018