| Chain sequence(s) |
A: GAMGNVNCGGVPCKFGCCREDRCREIDCD
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:18)
[INFO] Main: Simulation completed successfully. (00:00:19)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | G | A | -0.2426 | |
| 2 | A | A | 0.0169 | |
| 3 | M | A | 0.3435 | |
| 4 | G | A | -0.2866 | |
| 5 | N | A | -0.8044 | |
| 6 | V | A | -0.0153 | |
| 7 | N | A | -1.1081 | |
| 8 | C | A | -1.2536 | |
| 9 | G | A | -1.3558 | |
| 10 | G | A | -2.4283 | |
| 11 | V | A | -1.8979 | |
| 12 | P | A | -1.0078 | |
| 13 | C | A | 0.0000 | |
| 14 | K | A | -1.0181 | |
| 15 | F | A | 0.3204 | |
| 16 | G | A | -0.7439 | |
| 17 | C | A | -1.3104 | |
| 18 | C | A | -2.4799 | |
| 19 | R | A | -4.0323 | |
| 20 | E | A | -4.2997 | |
| 21 | D | A | -4.4003 | |
| 22 | R | A | -4.2140 | |
| 23 | C | A | -2.7514 | |
| 24 | R | A | -3.0412 | |
| 25 | E | A | -1.7815 | |
| 26 | I | A | -0.3452 | |
| 27 | D | A | -1.5815 | |
| 28 | C | A | -1.2220 | |
| 29 | D | A | -1.8177 |