Project name: query_structure

Status: done

Started: 2026-03-17 00:28:20
Settings
Chain sequence(s) A: QVQLQESGGGLVQAGGSLRLSSAASGRTFSNYNMGWLRQAPGNEREFVAAITSSGTSTYYADSVNGRFTISRDNAKNTVYLQMNSLNPEDTAVYYSAAGRYNNLRDVSGYLYRGQGTQVTVSS
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:29)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:30)
Show buried residues

Minimal score value
-3.6836
Maximal score value
1.3525
Average score
-0.931
Total score value
-114.5119

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q A -1.7571
2 V A -1.4831
3 Q A -2.1412
4 L A 0.0000
5 Q A -1.9532
6 E A 0.0000
7 S A -1.1928
8 G A -1.0331
9 G A -0.8460
10 G A -0.0738
11 L A 1.0245
12 V A 0.0469
13 Q A -1.1925
14 A A -1.3734
15 G A -1.3225
16 G A -0.9134
17 S A -1.3842
18 L A -1.0844
19 R A -2.2986
20 L A 0.0000
21 S A -0.8431
22 S A 0.0000
23 A A -1.1454
24 A A 0.0000
25 S A -1.5512
26 G A -1.9527
27 R A -2.4621
28 T A -1.7034
29 F A 0.0000
30 S A -1.7732
31 N A -2.1271
32 Y A 0.0000
33 N A -1.1050
34 M A 0.0000
35 G A 0.0000
36 W A 0.0000
37 L A 0.0000
38 R A -1.4636
39 Q A -2.1609
40 A A -2.0248
41 P A -1.3386
42 G A -1.8194
43 N A -3.0465
44 E A -3.6836
45 R A -3.3868
46 E A -2.0381
47 F A 0.0000
48 V A 0.0000
49 A A 0.0000
50 A A 0.0000
51 I A 0.0000
52 T A -0.8131
53 S A -1.1647
54 S A -0.7669
55 G A -0.6587
56 T A -0.3310
57 S A -0.2031
58 T A -0.1218
59 Y A -0.3184
60 Y A -0.7909
61 A A 0.0000
62 D A -2.2382
63 S A -1.6685
64 V A 0.0000
65 N A -2.1536
66 G A -1.6791
67 R A -1.5369
68 F A 0.0000
69 T A -0.9360
70 I A 0.0000
71 S A -0.4677
72 R A -0.9961
73 D A -1.5066
74 N A -1.8885
75 A A -1.4234
76 K A -2.3011
77 N A -2.0454
78 T A -1.3135
79 V A 0.0000
80 Y A -0.6068
81 L A 0.0000
82 Q A -1.6247
83 M A 0.0000
84 N A -1.9621
85 S A -1.3452
86 L A 0.0000
87 N A -1.9721
88 P A -1.6713
89 E A -2.1612
90 D A 0.0000
91 T A -0.8734
92 A A 0.0000
93 V A -0.7738
94 Y A 0.0000
95 Y A -0.9731
96 S A 0.0000
97 A A 0.0000
98 A A 0.0000
99 G A 0.0000
100 R A -1.7603
101 Y A -0.8039
102 N A -1.7590
103 N A -1.7221
104 L A -1.3482
105 R A -2.0790
106 D A -1.4940
107 V A -0.2718
108 S A 0.0233
109 G A 0.0000
110 Y A 0.0000
111 L A 1.3525
112 Y A 0.2000
113 R A -1.2345
114 G A -1.6995
115 Q A -1.8821
116 G A -1.2849
117 T A 0.0000
118 Q A -1.0862
119 V A 0.0000
120 T A -0.2722
121 V A 0.0000
122 S A -0.7108
123 S A -0.7889
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Laboratory of Theory of Biopolymers 2018