Project name: pep2

Status: done

Started: 2024-06-25 22:50:24
Settings
Chain sequence(s) A: GIGGKILSGFKDLLKGAAKALVKTVLF
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:28)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:29)
Show buried residues

Minimal score value
-2.094
Maximal score value
3.3073
Average score
0.5835
Total score value
15.7558

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 G A 0.1676
2 I A 1.6419
3 G A 0.7851
4 G A 0.2973
5 K A -0.0328
6 I A 1.9899
7 L A 1.9281
8 S A 0.3926
9 G A 0.3294
10 F A 1.4102
11 K A -0.6872
12 D A -1.2776
13 L A 0.3792
14 L A -0.4162
15 K A -2.0940
16 G A -1.2219
17 A A -0.5953
18 A A -0.7085
19 K A -1.4378
20 A A -0.1578
21 L A 1.5905
22 V A 1.5527
23 K A 0.5125
24 T A 1.7711
25 V A 3.1796
26 L A 3.3073
27 F A 3.1499
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Laboratory of Theory of Biopolymers 2018