Project name: apo77

Status: done

Started: 2025-07-25 12:11:40
Settings
Chain sequence(s) A: MVLSEGEWQLVLHVWAKVEADVAGHGQDILIRLFKSHPETLEKFDRFKHLKTEAEMKASEDLKKHGVTVLTALGAILK
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:02:45)
[INFO]       Main:     Simulation completed successfully.                                          (00:02:46)
Show buried residues

Minimal score value
-4.1752
Maximal score value
2.178
Average score
-1.234
Total score value
-96.2538

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A 1.9972
2 V A 2.1780
3 L A 0.6725
4 S A -0.8779
5 E A -2.0844
6 G A -1.7403
7 E A -1.3345
8 W A -0.7673
9 Q A -1.0593
10 L A 0.6277
11 V A 0.6046
12 L A 0.0729
13 H A -0.2445
14 V A 0.5855
15 W A 0.0000
16 A A -0.9978
17 K A -2.0463
18 V A -1.5489
19 E A -1.9490
20 A A -1.8132
21 D A -2.3693
22 V A -1.5065
23 A A -1.5044
24 G A -1.6899
25 H A -1.6500
26 G A 0.0000
27 Q A 0.0000
28 D A -2.2120
29 I A -0.7446
30 L A 0.0000
31 I A 0.0000
32 R A -2.5616
33 L A -1.3253
34 F A 0.0000
35 K A -2.6941
36 S A -1.8447
37 H A -2.2398
38 P A -2.7770
39 E A -2.8223
40 T A -2.2900
41 L A -3.2193
42 E A -4.1752
43 K A -3.5071
44 F A -2.9466
45 D A -3.9285
46 R A -3.7586
47 F A 0.0000
48 K A -4.1700
49 H A -3.1561
50 L A 0.0000
51 K A -2.9684
52 T A -2.3304
53 E A -3.0574
54 A A -1.8683
55 E A -2.3611
56 M A 0.0000
57 K A -3.0126
58 A A -1.9490
59 S A -2.5640
60 E A -3.3711
61 D A -3.3144
62 L A 0.0000
63 K A -2.8257
64 K A -2.7201
65 H A -1.4695
66 G A 0.0000
67 V A -0.4109
68 T A 0.0781
69 V A 0.8125
70 L A 0.0000
71 T A 0.6912
72 A A 1.1348
73 L A 1.3708
74 G A 0.0000
75 A A 0.7400
76 I A 1.8441
77 L A 0.7968
78 K A -0.6813
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Laboratory of Theory of Biopolymers 2018