Project name: REST_test

Status: done

Started: 2025-02-03 06:06:06
Settings
Chain sequence(s) A: SAVKALFDYKAQREDELTFTKSAIIQNVEKQDGGWWRGDYGGKKQLWFPSNYVEE
P: QPPVPPQRPM
input PDB
Selected Chain(s) A,P
Distance of aggregation 5 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:09)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:09)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:09)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:09)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:09)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:52)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:53)
Show buried residues

Minimal score value
-2.1119
Maximal score value
1.755
Average score
-0.5251
Total score value
-34.1285

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
5 S A -0.2984
6 A A -0.1041
7 V A 0.0000
8 K A -0.5090
9 A A 0.0000
10 L A 0.4897
11 F A -0.1323
12 D A -1.9426
13 Y A 0.0000
14 K A -1.7037
15 A A -0.5272
16 Q A -1.4092
17 R A -1.7058
18 E A -2.1119
19 D A -0.7591
20 E A 0.0000
21 L A 0.0000
22 T A -0.2461
23 F A 0.0000
24 T A -0.6549
25 K A -1.9122
26 S A -0.4856
27 A A 0.0000
28 I A 1.3035
29 I A 0.0000
30 Q A -0.8704
31 N A -1.0938
32 V A -0.3179
33 E A -1.9261
34 K A -1.7451
35 Q A -1.7587
36 D A -2.1009
37 G A -0.8253
38 G A -0.2021
39 W A 0.0000
40 W A -0.0702
41 R A -0.5407
42 G A 0.0000
43 D A -0.4527
44 Y A 0.2405
45 G A -0.4840
46 G A -0.6743
47 K A -1.0672
48 K A -1.9120
49 Q A -0.6532
50 L A 0.1758
51 W A 0.1730
52 F A 0.0000
53 P A 0.0000
54 S A -0.1529
55 N A -0.6529
56 Y A 0.0000
57 V A 0.0000
58 E A -1.7099
59 E A -2.0696
1 Q P -1.2441
2 P P -0.4807
3 P P 0.2228
4 V P 1.7550
5 P P 0.2622
6 P P -0.3364
7 Q P -1.2681
8 R P -0.5356
9 P P -0.1108
10 M P 1.0067
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018