| Chain sequence(s) |
A: FGGHKGF
C: FGGHKGF B: FGGHKGF D: FGGHKGF input PDB |
| Selected Chain(s) | A,C,B,D |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:31)
[INFO] Main: Simulation completed successfully. (00:00:32)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | F | A | 1.3191 | |
| 2 | G | A | 0.4194 | |
| 3 | G | A | -0.1848 | |
| 4 | H | A | -1.9227 | |
| 5 | K | A | -1.7789 | |
| 6 | G | A | -0.2735 | |
| 7 | F | A | 1.9814 | |
| 1 | F | B | 1.2782 | |
| 2 | G | B | 0.3472 | |
| 3 | G | B | -0.2266 | |
| 4 | H | B | -1.9615 | |
| 5 | K | B | -1.5378 | |
| 6 | G | B | -0.3563 | |
| 7 | F | B | 1.9484 | |
| 1 | F | C | 2.2201 | |
| 2 | G | C | 0.5697 | |
| 3 | G | C | -0.8162 | |
| 4 | H | C | -1.7756 | |
| 5 | K | C | -1.7598 | |
| 6 | G | C | 0.2542 | |
| 7 | F | C | 1.1775 | |
| 1 | F | D | 2.1735 | |
| 2 | G | D | 0.4201 | |
| 3 | G | D | -0.8389 | |
| 4 | H | D | -1.6907 | |
| 5 | K | D | -1.7544 | |
| 6 | G | D | 0.1533 | |
| 7 | F | D | 0.4260 |