| Chain sequence(s) |
A: ALVFFAEDCGSNKCAIIGLAV
C: ALVFFAEDCGSNKCAIIGLAV B: ALVFFAEDCGSNKCAIIGLAV E: ALVFFAEDCGSNKCAIIGLAV D: ALVFFAEDCGSNKCAIIGLAV F: ALVFFAEDCGSNKCAIIGLAV input PDB |
| Selected Chain(s) | A,C,B,E,D,F |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:57)
[INFO] Main: Simulation completed successfully. (00:01:00)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | A | A | 0.1893 | |
| 2 | L | A | 0.0000 | |
| 3 | V | A | 1.2541 | |
| 4 | F | A | 2.0251 | |
| 5 | F | A | 2.0790 | |
| 6 | A | A | 0.0000 | |
| 7 | E | A | 0.4951 | |
| 8 | D | A | -0.2569 | |
| 9 | C | A | -0.8911 | |
| 10 | G | A | -1.5900 | |
| 11 | S | A | -1.5472 | |
| 12 | N | A | -2.1790 | |
| 13 | K | A | -2.4146 | |
| 14 | C | A | -0.4675 | |
| 15 | A | A | 0.6467 | |
| 16 | I | A | 2.2576 | |
| 17 | I | A | 1.7377 | |
| 18 | G | A | 0.9826 | |
| 19 | L | A | 1.0890 | |
| 20 | A | A | 0.8819 | |
| 21 | V | A | 0.8881 | |
| 1 | A | B | 0.5624 | |
| 2 | L | B | 1.1875 | |
| 3 | V | B | 1.4990 | |
| 4 | F | B | 2.0819 | |
| 5 | F | B | 2.0407 | |
| 6 | A | B | 0.0000 | |
| 7 | E | B | 0.1961 | |
| 8 | D | B | -0.9737 | |
| 9 | C | B | -1.0908 | |
| 10 | G | B | -1.6792 | |
| 11 | S | B | -1.3989 | |
| 12 | N | B | -2.1690 | |
| 13 | K | B | -2.4685 | |
| 14 | C | B | -0.6191 | |
| 15 | A | B | 0.4249 | |
| 16 | I | B | 2.0992 | |
| 17 | I | B | 1.4908 | |
| 18 | G | B | 0.9984 | |
| 19 | L | B | 1.2761 | |
| 20 | A | B | 1.4999 | |
| 21 | V | B | 2.0151 | |
| 1 | A | C | 0.5888 | |
| 2 | L | C | 1.1640 | |
| 3 | V | C | 1.3184 | |
| 4 | F | C | 1.6732 | |
| 5 | F | C | 1.6966 | |
| 6 | A | C | 0.0000 | |
| 7 | E | C | 0.7013 | |
| 8 | D | C | 0.2792 | |
| 9 | C | C | -0.3800 | |
| 10 | G | C | -1.5095 | |
| 11 | S | C | -1.6812 | |
| 12 | N | C | -2.2924 | |
| 13 | K | C | -2.2724 | |
| 14 | C | C | -0.2947 | |
| 15 | A | C | 0.7568 | |
| 16 | I | C | 2.2825 | |
| 17 | I | C | 1.4946 | |
| 18 | G | C | 0.9446 | |
| 19 | L | C | 1.3222 | |
| 20 | A | C | 1.4201 | |
| 21 | V | C | 1.9814 | |
| 1 | A | D | 0.2867 | |
| 2 | L | D | 1.0219 | |
| 3 | V | D | 1.3077 | |
| 4 | F | D | 1.6473 | |
| 5 | F | D | 1.7403 | |
| 6 | A | D | 0.0000 | |
| 7 | E | D | 0.4276 | |
| 8 | D | D | -0.1400 | |
| 9 | C | D | -0.6332 | |
| 10 | G | D | -1.4791 | |
| 11 | S | D | -1.4697 | |
| 12 | N | D | -2.1954 | |
| 13 | K | D | -2.3764 | |
| 14 | C | D | -0.4497 | |
| 15 | A | D | 0.5604 | |
| 16 | I | D | 2.2590 | |
| 17 | I | D | 1.6102 | |
| 18 | G | D | 1.0153 | |
| 19 | L | D | 1.3742 | |
| 20 | A | D | 1.4168 | |
| 21 | V | D | 1.9571 | |
| 1 | A | E | 0.3055 | |
| 2 | L | E | 0.7908 | |
| 3 | V | E | 1.3495 | |
| 4 | F | E | 1.9895 | |
| 5 | F | E | 2.2043 | |
| 6 | A | E | 0.0000 | |
| 7 | E | E | 0.6456 | |
| 8 | D | E | 0.2718 | |
| 9 | C | E | -0.5694 | |
| 10 | G | E | -1.6385 | |
| 11 | S | E | -1.7304 | |
| 12 | N | E | -2.2008 | |
| 13 | K | E | -2.1128 | |
| 14 | C | E | -0.3444 | |
| 15 | A | E | 0.7310 | |
| 16 | I | E | 2.2933 | |
| 17 | I | E | 1.4935 | |
| 18 | G | E | 1.0872 | |
| 19 | L | E | 1.5182 | |
| 20 | A | E | 1.3282 | |
| 21 | V | E | 1.8981 | |
| 1 | A | F | 0.2432 | |
| 2 | L | F | 0.0000 | |
| 3 | V | F | 1.1949 | |
| 4 | F | F | 1.6335 | |
| 5 | F | F | 1.7452 | |
| 6 | A | F | 0.0000 | |
| 7 | E | F | 0.3311 | |
| 8 | D | F | -0.6583 | |
| 9 | C | F | -1.1527 | |
| 10 | G | F | -1.5222 | |
| 11 | S | F | -1.6102 | |
| 12 | N | F | -2.2956 | |
| 13 | K | F | -2.5008 | |
| 14 | C | F | -0.7740 | |
| 15 | A | F | 0.3902 | |
| 16 | I | F | 2.2125 | |
| 17 | I | F | 1.5713 | |
| 18 | G | F | 0.8763 | |
| 19 | L | F | 1.1858 | |
| 20 | A | F | 0.8607 | |
| 21 | V | F | 0.9087 |