Project name: 3015

Status: done

Started: 2026-04-10 11:49:02
Settings
Chain sequence(s) H: QVQLVESGGGLVQPGGSLRLSCAASGLDRPFSSYSWAWFRQAPGQGLEAVAAIGGASGETVYHPAVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAAGGGGIGEGHEYWGQGTLVTVS
input PDB
Selected Chain(s) H
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with H chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:13)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:14)
Show buried residues

Minimal score value
-2.9574
Maximal score value
1.6597
Average score
-0.667
Total score value
-80.7085

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q H -1.7024
2 V H -1.4595
3 Q H -1.1941
4 L H 0.0000
5 V H 0.7216
6 E H 0.0000
7 S H -0.2248
8 G H -0.6614
9 G H 0.2368
10 G H 0.9158
11 L H 1.4555
12 V H -0.0663
13 Q H -1.4131
14 P H -1.8230
15 G H -1.6011
16 G H -1.0526
17 S H -1.1702
18 L H -0.6111
19 R H -1.5666
20 L H 0.0000
21 S H -0.3235
22 C H 0.0000
23 A H -0.2685
24 A H -0.4684
25 S H -0.9131
26 G H -1.5807
27 L H -1.7314
28 D H -2.6060
29 R H -2.3556
30 P H -1.5123
31 F H 0.0000
32 S H -0.9540
33 S H -1.0942
34 Y H 0.0000
35 S H -0.7750
36 W H 0.0000
37 A H 0.3988
38 W H 0.0000
39 F H 0.5974
40 R H 0.0000
41 Q H -0.3172
42 A H -0.8492
43 P H -0.9847
44 G H -1.2174
45 Q H -1.6388
46 G H -0.7935
47 L H 0.5562
48 E H -0.2007
49 A H 0.1478
50 V H 0.0000
51 A H 0.0000
52 A H 0.2779
53 I H 0.0000
54 G H -0.6694
55 G H -0.7161
56 A H -0.5546
57 S H -0.9520
58 G H -1.1035
59 E H -1.6393
60 T H -0.1315
61 V H 1.0708
62 Y H 0.2064
63 H H -0.4966
64 P H -0.7778
65 A H -0.9149
66 V H 0.0000
67 K H -1.8664
68 G H -1.5876
69 R H -1.3778
70 F H 0.0000
71 T H -0.6034
72 I H 0.0000
73 S H -0.6799
74 R H -1.2137
75 D H -1.8666
76 N H -2.1072
77 S H -1.8461
78 K H -2.5411
79 N H -1.9439
80 T H -1.1770
81 L H 0.0000
82 Y H -0.5166
83 L H 0.0000
84 Q H -0.9972
85 M H 0.0000
86 N H -1.4349
87 S H -1.4495
88 L H 0.0000
89 R H -2.9574
90 A H -2.0526
91 E H -2.4359
92 D H 0.0000
93 T H -0.5302
94 A H 0.0000
95 V H 0.9376
96 Y H 0.0000
97 Y H 0.5887
98 C H 0.0000
99 A H 0.0000
100 A H 0.0000
101 G H -1.7019
102 G H -1.6780
103 G H -1.6594
104 G H -0.3278
105 I H 1.0015
106 G H -0.8242
107 E H -2.4862
108 G H -2.1794
109 H H -2.3569
110 E H -2.4460
111 Y H -0.9210
112 W H 0.0182
113 G H -0.0654
114 Q H -0.8861
115 G H 0.1161
116 T H 0.5688
117 L H 1.6597
118 V H 0.0000
119 T H 0.2989
120 V H 0.0000
121 S H -0.6796
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018