| Chain sequence(s) |
A: QVQLVESGGGLVQAGGSLRLSCAASGFPVNAQYMDWYRQAPGKEREWVAAIESFGWWTYYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCAVQVGLEYYGQGTQVTVS
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:41)
[INFO] Main: Simulation completed successfully. (00:01:42)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | A | -1.4685 | |
| 2 | V | A | -0.7693 | |
| 3 | Q | A | -1.1746 | |
| 4 | L | A | 0.0000 | |
| 5 | V | A | 0.3045 | |
| 6 | E | A | 0.0000 | |
| 7 | S | A | -0.7616 | |
| 8 | G | A | -1.0525 | |
| 9 | G | A | -0.8580 | |
| 10 | G | A | -0.1252 | |
| 11 | L | A | 0.9175 | |
| 12 | V | A | 0.0000 | |
| 13 | Q | A | -1.3240 | |
| 14 | A | A | -1.5232 | |
| 15 | G | A | -1.4122 | |
| 16 | G | A | -0.9563 | |
| 17 | S | A | -1.2669 | |
| 18 | L | A | -1.0603 | |
| 19 | R | A | -2.1390 | |
| 20 | L | A | 0.0000 | |
| 21 | S | A | -0.5963 | |
| 22 | C | A | 0.0000 | |
| 23 | A | A | -0.4252 | |
| 24 | A | A | 0.0000 | |
| 25 | S | A | -0.7518 | |
| 26 | G | A | -1.0100 | |
| 27 | F | A | -0.4824 | |
| 28 | P | A | -0.9378 | |
| 29 | V | A | 0.0000 | |
| 30 | N | A | -0.5984 | |
| 31 | A | A | 0.0308 | |
| 32 | Q | A | 0.1673 | |
| 33 | Y | A | 0.7700 | |
| 34 | M | A | 0.0000 | |
| 35 | D | A | 0.0000 | |
| 36 | W | A | 0.0000 | |
| 37 | Y | A | -0.4238 | |
| 38 | R | A | -1.2996 | |
| 39 | Q | A | -2.2744 | |
| 40 | A | A | -2.1439 | |
| 41 | P | A | -1.4834 | |
| 42 | G | A | -2.0205 | |
| 43 | K | A | -3.4596 | |
| 44 | E | A | -3.7318 | |
| 45 | R | A | -3.0946 | |
| 46 | E | A | -1.8311 | |
| 47 | W | A | -0.5594 | |
| 48 | V | A | 0.0000 | |
| 49 | A | A | 0.0000 | |
| 50 | A | A | 0.7287 | |
| 51 | I | A | 0.0000 | |
| 52 | E | A | 0.9500 | |
| 53 | S | A | 0.9717 | |
| 54 | F | A | 1.4897 | |
| 55 | G | A | 1.0013 | |
| 56 | W | A | 2.0526 | |
| 57 | W | A | 2.1548 | |
| 58 | T | A | 1.3079 | |
| 59 | Y | A | 0.8337 | |
| 60 | Y | A | -0.3795 | |
| 61 | A | A | -1.0934 | |
| 62 | D | A | -2.3120 | |
| 63 | S | A | -1.7297 | |
| 64 | V | A | 0.0000 | |
| 65 | K | A | -2.5036 | |
| 66 | G | A | -1.8021 | |
| 67 | R | A | -1.5441 | |
| 68 | F | A | 0.0000 | |
| 69 | T | A | -0.7448 | |
| 70 | I | A | 0.0000 | |
| 71 | S | A | -0.7989 | |
| 72 | R | A | -1.6687 | |
| 73 | D | A | -2.3039 | |
| 74 | N | A | -2.4239 | |
| 75 | A | A | -1.8739 | |
| 76 | K | A | -2.5569 | |
| 77 | N | A | -2.0235 | |
| 78 | T | A | -1.4195 | |
| 79 | V | A | 0.0000 | |
| 80 | Y | A | -0.8309 | |
| 81 | L | A | 0.0000 | |
| 82 | Q | A | -1.2394 | |
| 83 | M | A | 0.0000 | |
| 84 | N | A | -1.4716 | |
| 85 | S | A | -1.2855 | |
| 86 | L | A | 0.0000 | |
| 87 | K | A | -2.5583 | |
| 88 | P | A | -2.0261 | |
| 89 | E | A | -2.4110 | |
| 90 | D | A | 0.0000 | |
| 91 | T | A | -1.0476 | |
| 92 | A | A | 0.0000 | |
| 93 | V | A | -0.7045 | |
| 94 | Y | A | 0.0000 | |
| 95 | Y | A | -0.2473 | |
| 96 | C | A | 0.0000 | |
| 97 | A | A | 0.0000 | |
| 98 | V | A | 0.0000 | |
| 99 | Q | A | -0.4225 | |
| 100 | V | A | 0.3310 | |
| 101 | G | A | 0.0575 | |
| 102 | L | A | 0.7174 | |
| 103 | E | A | -0.6398 | |
| 104 | Y | A | -0.1162 | |
| 105 | Y | A | 0.0148 | |
| 106 | G | A | -0.2570 | |
| 107 | Q | A | -1.0915 | |
| 108 | G | A | 0.0000 | |
| 109 | T | A | 0.0000 | |
| 110 | Q | A | -1.2001 | |
| 111 | V | A | 0.0000 | |
| 112 | T | A | -0.3870 | |
| 113 | V | A | 0.0000 | |
| 114 | S | A | -0.8230 |