Project name: KFDV_NS4A

Status: done

Started: 2026-06-11 05:46:19
Settings
Chain sequence(s) A: SVGDVLGGLAGVPGLLRHRCASALDVVYTLLNENPGSRAMRMAERDAPEAFLTIVEVAVLGVATLGILWCFVARTSVSRMFLGTVVLFAALFLLWIGGVDYGHMAGIALIFYTLLTVLQPEPGKQRSSDDNRLAYFLLGLFSLAGLVTA
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:10)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:11)
Show buried residues

Minimal score value
-3.8738
Maximal score value
3.874
Average score
0.517
Total score value
77.0297

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 S A 0.4381
2 V A 1.7439
3 G A 0.4885
4 D A -0.2832
5 V A 2.1099
6 L A 2.1443
7 G A 0.5588
8 G A 0.8896
9 L A 2.0197
10 A A 1.1346
11 G A 0.7982
12 V A 1.4318
13 P A 0.8126
14 G A 0.0979
15 L A 0.7572
16 L A 0.0000
17 R A -1.0731
18 H A -1.3222
19 R A -1.3618
20 C A -0.4764
21 A A -0.8817
22 S A -1.3535
23 A A 0.0000
24 L A 0.6808
25 D A -0.6769
26 V A -0.3137
27 V A 0.9123
28 Y A 1.1896
29 T A -0.1326
30 L A 0.1846
31 L A 1.0222
32 N A -0.8063
33 E A -1.8274
34 N A -2.2181
35 P A -1.7244
36 G A -1.8086
37 S A -2.0408
38 R A -2.5791
39 A A -1.7301
40 M A -2.4993
41 R A -3.2904
42 M A -1.8531
43 A A 0.0000
44 E A -3.3713
45 R A -3.8738
46 D A -3.3841
47 A A -1.8263
48 P A -1.1095
49 E A -1.3543
50 A A 0.0000
51 F A 2.5113
52 L A 2.4989
53 T A 0.0000
54 I A 2.9277
55 V A 3.4704
56 E A 2.4132
57 V A 2.2981
58 A A 2.7118
59 V A 3.3148
60 L A 2.6960
61 G A 2.6681
62 V A 3.1910
63 A A 2.0428
64 T A 1.8891
65 L A 2.4672
66 G A 2.2354
67 I A 2.1666
68 L A 2.1350
69 W A 2.0843
70 C A 1.1864
71 F A 1.5509
72 V A 0.0000
73 A A -0.1984
74 R A -1.3208
75 T A -0.3836
76 S A -0.5053
77 V A 0.2324
78 S A -0.6818
79 R A -1.5502
80 M A 0.1161
81 F A 1.0057
82 L A 1.0990
83 G A 0.0000
84 T A 1.6438
85 V A 2.2019
86 V A 2.8782
87 L A 0.0000
88 F A 3.1100
89 A A 2.6723
90 A A 2.7369
91 L A 3.3205
92 F A 3.8740
93 L A 3.6769
94 L A 2.7167
95 W A 3.1640
96 I A 3.3405
97 G A 1.3906
98 G A 0.6389
99 V A 0.4049
100 D A -1.2403
101 Y A 0.3284
102 G A -0.7357
103 H A -0.9165
104 M A 0.4908
105 A A 0.4361
106 G A 0.7233
107 I A 1.4276
108 A A 1.8415
109 L A 2.5034
110 I A 2.3769
111 F A 2.2300
112 Y A 2.3310
113 T A 1.7605
114 L A 1.8006
115 L A 1.1696
116 T A 0.3493
117 V A 0.7172
118 L A 1.0625
119 Q A -0.7394
120 P A -2.0996
121 E A -3.0162
122 P A -2.4033
123 G A -2.2013
124 K A -3.2737
125 Q A -2.8000
126 R A -2.4288
127 S A -2.1873
128 S A -2.0909
129 D A -2.7896
130 D A -1.8770
131 N A -1.3918
132 R A -1.5232
133 L A 0.4588
134 A A 0.0000
135 Y A 2.0233
136 F A 2.6817
137 L A 0.0000
138 L A 2.4218
139 G A 2.0901
140 L A 2.5114
141 F A 2.2355
142 S A 1.8577
143 L A 2.8168
144 A A 2.0685
145 G A 1.6409
146 L A 2.8989
147 V A 2.8190
148 T A 1.3954
149 A A 0.9910
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018