Project name: query_structure

Status: done

Started: 2026-03-17 01:07:13
Settings
Chain sequence(s) A: VNYGNGVSCSKTKCSVNWGQAFQERYTAGINSFVSGVASGAGSIGRRP
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:19)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:19)
Show buried residues

Minimal score value
-2.8235
Maximal score value
2.5285
Average score
-0.2199
Total score value
-10.5536

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 V A 1.7578
2 N A 0.1496
3 Y A 1.0496
4 G A -0.3517
5 N A -1.0554
6 G A -0.2272
7 V A 1.4611
8 S A 0.3513
9 C A 0.0258
10 S A -0.9998
11 K A -2.1153
12 T A -1.5720
13 K A -1.9105
14 C A -0.5609
15 S A 0.1346
16 V A 0.9150
17 N A -0.2058
18 W A 0.5412
19 G A -0.6508
20 Q A -1.5876
21 A A -0.8841
22 F A -0.2002
23 Q A -1.7946
24 E A -2.8235
25 R A -2.3684
26 Y A -0.5045
27 T A -0.5534
28 A A -0.7605
29 G A 0.1197
30 I A 1.2304
31 N A 0.0037
32 S A 0.9124
33 F A 2.5285
34 V A 1.4665
35 S A 0.6526
36 G A 0.6844
37 V A 1.7404
38 A A 0.9016
39 S A -0.0579
40 G A -0.1918
41 A A 0.3842
42 G A 0.4339
43 S A 0.3455
44 I A 0.8514
45 G A -0.8883
46 R A -2.5409
47 R A -2.7158
48 P A -1.6739
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Laboratory of Theory of Biopolymers 2018