Project name: 2A1

Status: done

Started: 2025-06-22 09:50:24
Settings
Chain sequence(s) H: QVQLQQSGAELVRPGTSVKVSCKASGYDFNNDLIEWVKQRPGQGLEWIAVINPGSGRTNYNEKFKGKATLTADKSSSTVYMQLSSLTSDDSAVYFCAMIYYGPHSYAMDYWGQGTSVTVSS
L: DIVMTQSHKFMSTVVGDRVSITCKASLDVRTAVAWYQQKPGQSPKLLIYSASYRYTGVPDRFTGSGSGTDFTFNIRSVQAEDLAVYYCQQHYGIPWTFGGGTKLEIK
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:11)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:12)
Show buried residues

Minimal score value
-3.4867
Maximal score value
1.3503
Average score
-0.618
Total score value
-140.9037

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q H -1.5491
2 V H -1.3486
3 Q H -1.9714
4 L H 0.0000
5 Q H -1.9437
6 Q H -1.2996
7 S H -0.9607
8 G H -0.7089
9 A H -0.0103
11 E H 0.1404
12 L H 0.9488
13 V H -0.2608
14 R H -1.8326
15 P H -1.6464
16 G H -1.2178
17 T H -1.0054
18 S H -0.9911
19 V H 0.0000
20 K H -1.1471
21 V H 0.0000
22 S H -0.6620
23 C H 0.0000
24 K H -1.5723
25 A H 0.0000
26 S H -1.4466
27 G H -1.4147
28 Y H -1.3743
29 D H -2.2183
30 F H 0.0000
35 N H -1.9724
36 N H -1.3552
37 D H 0.0000
38 L H -0.0597
39 I H 0.0000
40 E H 0.0000
41 W H 0.0000
42 V H 0.0000
43 K H 0.0000
44 Q H -0.9181
45 R H -1.5779
46 P H -1.1251
47 G H -1.3827
48 Q H -1.9717
49 G H -1.2715
50 L H 0.0000
51 E H -1.0626
52 W H 0.0000
53 I H 0.0000
54 A H 0.0000
55 V H 0.0000
56 I H 0.0000
57 N H -1.2177
58 P H 0.0000
59 G H -1.6767
62 S H -1.3438
63 G H -1.8072
64 R H -2.3078
65 T H -1.3421
66 N H -1.3362
67 Y H -1.3348
68 N H -2.1075
69 E H -3.4867
70 K H -3.2252
71 F H 0.0000
72 K H -3.1560
74 G H -1.9768
75 K H -1.7284
76 A H 0.0000
77 T H -0.8298
78 L H 0.0000
79 T H -0.5425
80 A H -0.7902
81 D H -1.3833
82 K H -1.9557
83 S H -1.0481
84 S H -0.9105
85 S H -1.4015
86 T H 0.0000
87 V H 0.0000
88 Y H -0.2830
89 M H 0.0000
90 Q H -1.0446
91 L H 0.0000
92 S H -0.8156
93 S H -0.8957
94 L H 0.0000
95 T H -1.2304
96 S H -1.3536
97 D H -1.8193
98 D H 0.0000
99 S H -0.6145
100 A H 0.0000
101 V H 0.0327
102 Y H 0.0000
103 F H 0.0000
104 C H 0.0000
105 A H 0.0000
106 M H 0.0000
107 I H 0.0000
108 Y H 1.3350
109 Y H 1.3426
110 G H 0.4484
111 P H -0.0392
112A H H -0.6393
112 S H 0.3861
113 Y H 1.2520
114 A H 0.0000
115 M H 0.0000
116 D H 0.0000
117 Y H 0.0173
118 W H -0.5869
119 G H 0.0000
120 Q H -1.8482
121 G H -0.9086
122 T H 0.0000
123 S H -0.1117
124 V H 0.0000
125 T H -0.0643
126 V H 0.0000
127 S H -0.6651
128 S H -0.8115
1 D L -1.2754
2 I L 0.0000
3 V L 1.1773
4 M L 0.0000
5 T L -0.9130
6 Q L -0.9925
7 S L -1.1383
8 H L -1.2210
9 K L -1.4231
10 F L 0.4345
11 M L 0.0681
12 S L 0.0851
13 T L 0.0000
14 V L 0.6752
15 V L 1.1206
16 G L -0.6351
17 D L -1.5571
18 R L -2.6024
19 V L 0.0000
20 S L -0.6996
21 I L 0.0000
22 T L -1.0161
23 C L 0.0000
24 K L -2.1595
25 A L 0.0000
26 S L -0.0672
27 L L 0.0233
28 D L -2.0347
29 V L 0.0000
36 R L -2.4556
37 T L -1.4664
38 A L -0.6031
39 V L 0.0000
40 A L 0.0000
41 W L 0.0000
42 Y L 0.0000
43 Q L 0.0000
44 Q L -0.9130
45 K L -1.3900
46 P L -0.9909
47 G L -1.4256
48 Q L -1.9992
49 S L -1.2574
50 P L 0.0000
51 K L -0.7738
52 L L 0.0000
53 L L 0.0000
54 I L 0.0000
55 Y L 0.0000
56 S L 0.0000
57 A L 0.0000
65 S L 0.0318
66 Y L 0.4271
67 R L -0.4673
68 Y L -0.1242
69 T L -0.2164
70 G L -0.7111
71 V L -0.7043
72 P L -1.2288
74 D L -2.3911
75 R L -2.1603
76 F L 0.0000
77 T L -0.8518
78 G L 0.0000
79 S L -0.5432
80 G L -1.4384
83 S L -1.9786
84 G L -2.1360
85 T L -2.1223
86 D L -2.8845
87 F L 0.0000
88 T L -0.8112
89 F L 0.0000
90 N L 0.0000
91 I L 0.0000
92 R L -3.2074
93 S L -1.8462
94 V L 0.0000
95 Q L -1.0591
96 A L -0.3466
97 E L -1.5607
98 D L 0.0000
99 L L -0.2768
100 A L 0.0000
101 V L -0.3067
102 Y L 0.0000
103 Y L 0.0000
104 C L 0.0000
105 Q L 0.0000
106 Q L 0.0000
107 H L 0.0000
108 Y L 0.2124
109 G L 0.3096
114 I L 0.3276
115 P L -0.6540
116 W L 0.0000
117 T L 0.0640
118 F L 0.0000
119 G L 0.0000
120 G L -1.1496
121 G L 0.0000
122 T L 0.0000
123 K L -0.7248
124 L L 0.0000
125 E L 0.2011
126 I L 1.3503
127 K L -0.4850
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Laboratory of Theory of Biopolymers 2018