Project name: Diptericin

Status: done

Started: 2026-04-12 13:31:54
Settings
Chain sequence(s) A: YPMPDDMTMKPTPPPQYPLNLQGGGGGQSGDGFGFAVQGHQKVWTSDNGRHEIGLNGGYGQHLGGPYGNSEPSWKVGSTYTYRFPNF
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:34)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:35)
Show buried residues

Minimal score value
-2.7235
Maximal score value
1.5546
Average score
-0.4371
Total score value
-38.0317

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
20 Y A 1.4517
21 P A 0.5746
22 M A 0.4101
23 P A -0.8967
24 D A -2.2702
25 D A -2.1140
26 M A -0.3955
27 T A -0.3281
28 M A 0.0990
29 K A -1.4321
30 P A -0.9618
31 T A -0.7154
32 P A -1.0234
33 P A -0.7089
34 P A -0.7248
35 Q A -0.8539
36 Y A 0.6555
37 P A 0.3164
38 L A 0.1344
39 N A -0.9398
40 L A 0.2148
41 Q A -1.1611
42 G A -0.8742
43 G A -1.0699
44 G A -0.4619
45 G A -0.6427
46 G A -1.0146
47 Q A -1.8675
48 S A -1.4002
49 G A -1.6255
50 D A -1.9340
51 G A -0.9384
52 F A 0.2839
53 G A -0.0859
54 F A 0.4291
55 A A -0.1846
56 V A 0.0367
57 Q A -1.0624
58 G A -0.6405
59 H A -1.0473
60 Q A -0.8874
61 K A -0.9333
62 V A 0.7256
63 W A 0.7486
64 T A -0.4667
65 S A -1.4459
66 D A -2.6547
67 N A -2.7235
68 G A -1.9064
69 R A -1.5908
70 H A -0.6248
71 E A -0.0626
72 I A 1.0110
73 G A 0.0000
74 L A 0.8117
75 N A -0.4809
76 G A 0.0634
77 G A -0.3458
78 Y A 0.3437
79 G A -0.3703
80 Q A -0.4330
81 H A -0.7293
82 L A -0.3943
83 G A -0.6304
84 G A -1.0651
85 P A -0.4315
86 Y A 0.4488
87 G A -0.7983
88 N A -1.4901
89 S A -1.6634
90 E A -2.2277
91 P A -1.0543
92 S A -0.5709
93 W A 0.3896
94 K A -0.5343
95 V A 1.0153
96 G A 0.3405
97 S A 0.5965
98 T A 0.6895
99 Y A 1.5546
100 T A 0.7001
101 Y A 0.9989
102 R A -0.4409
103 F A 1.3130
104 P A 0.4205
105 N A -0.0036
106 F A 1.5263
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Laboratory of Theory of Biopolymers 2018