Project name: query_structure

Status: done

Started: 2026-03-17 00:36:53
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Chain sequence(s) A: QVQLVESGGALVQPGGSLRLSSAASGFPVNRYSMRWYRQAPGKEREWVSGMSSAGDRSSYEDSVKGRFTSSRDDARNTVYLQMNSLKPEDTAVYYSNVNVGFEYWGQGTQVTVSS
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:42)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:43)
Show buried residues

Minimal score value
-3.9408
Maximal score value
1.3417
Average score
-0.9918
Total score value
-114.0621

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q A -1.4919
2 V A -0.6272
3 Q A -0.9603
4 L A 0.0000
5 V A 0.7774
6 E A 0.0000
7 S A -0.6405
8 G A -1.1680
9 G A -0.6734
10 A A 0.0438
11 L A 1.1490
12 V A 0.0285
13 Q A -1.3198
14 P A -1.5963
15 G A -1.4240
16 G A -0.9744
17 S A -1.2843
18 L A -0.9566
19 R A -2.1416
20 L A 0.0000
21 S A -0.4794
22 S A 0.0000
23 A A -0.2740
24 A A 0.0000
25 S A -0.7082
26 G A -1.0557
27 F A 0.0000
28 P A -1.4375
29 V A 0.0000
30 N A -1.9692
31 R A -2.1205
32 Y A -1.0253
33 S A -0.9721
34 M A 0.0000
35 R A -0.4240
36 W A 0.0000
37 Y A -0.9394
38 R A -1.7181
39 Q A -2.4923
40 A A -2.2386
41 P A -1.4534
42 G A -1.9892
43 K A -3.5876
44 E A -3.9408
45 R A -3.4555
46 E A -3.1098
47 W A -1.2850
48 V A 0.0000
49 S A 0.0000
50 G A -0.7027
51 M A 0.0000
52 S A -1.6193
53 S A -1.4593
54 A A -1.5431
55 G A -2.4939
56 D A -2.9325
57 R A -2.9938
58 S A -1.6869
59 S A -1.2322
60 Y A -1.3493
61 E A -2.1675
62 D A -2.8081
63 S A -2.0524
64 V A 0.0000
65 K A -2.8397
66 G A -1.8769
67 R A -1.4290
68 F A 0.0000
69 T A -0.9306
70 S A -0.8108
71 S A -1.0787
72 R A -1.8664
73 D A -2.7618
74 D A -3.3834
75 A A -2.2124
76 R A -2.8969
77 N A -2.3214
78 T A 0.0000
79 V A 0.0000
80 Y A 0.0000
81 L A 0.0000
82 Q A -1.2508
83 M A 0.0000
84 N A -1.5498
85 S A -1.3359
86 L A 0.0000
87 K A -2.4039
88 P A -1.9346
89 E A -2.3552
90 D A 0.0000
91 T A -0.9124
92 A A 0.0000
93 V A -0.4722
94 Y A 0.0000
95 Y A -0.3880
96 S A 0.0000
97 N A 0.0000
98 V A 0.0000
99 N A -0.3839
100 V A 0.0357
101 G A 0.2573
102 F A 1.3417
103 E A 0.1773
104 Y A 0.1779
105 W A 0.2089
106 G A -0.0712
107 Q A -0.7700
108 G A 0.0000
109 T A -0.6548
110 Q A -0.9255
111 V A 0.0000
112 T A -0.1979
113 V A 0.0000
114 S A -0.6727
115 S A -0.5979
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Laboratory of Theory of Biopolymers 2018