| Chain sequence(s) |
A: QVQLVESGGALVQPGGSLRLSSAASGFPVNRYSMRWYRQAPGKEREWVSGMSSAGDRSSYEDSVKGRFTSSRDDARNTVYLQMNSLKPEDTAVYYSNVNVGFEYWGQGTQVTVSS
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:42)
[INFO] Main: Simulation completed successfully. (00:01:43)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | A | -1.4919 | |
| 2 | V | A | -0.6272 | |
| 3 | Q | A | -0.9603 | |
| 4 | L | A | 0.0000 | |
| 5 | V | A | 0.7774 | |
| 6 | E | A | 0.0000 | |
| 7 | S | A | -0.6405 | |
| 8 | G | A | -1.1680 | |
| 9 | G | A | -0.6734 | |
| 10 | A | A | 0.0438 | |
| 11 | L | A | 1.1490 | |
| 12 | V | A | 0.0285 | |
| 13 | Q | A | -1.3198 | |
| 14 | P | A | -1.5963 | |
| 15 | G | A | -1.4240 | |
| 16 | G | A | -0.9744 | |
| 17 | S | A | -1.2843 | |
| 18 | L | A | -0.9566 | |
| 19 | R | A | -2.1416 | |
| 20 | L | A | 0.0000 | |
| 21 | S | A | -0.4794 | |
| 22 | S | A | 0.0000 | |
| 23 | A | A | -0.2740 | |
| 24 | A | A | 0.0000 | |
| 25 | S | A | -0.7082 | |
| 26 | G | A | -1.0557 | |
| 27 | F | A | 0.0000 | |
| 28 | P | A | -1.4375 | |
| 29 | V | A | 0.0000 | |
| 30 | N | A | -1.9692 | |
| 31 | R | A | -2.1205 | |
| 32 | Y | A | -1.0253 | |
| 33 | S | A | -0.9721 | |
| 34 | M | A | 0.0000 | |
| 35 | R | A | -0.4240 | |
| 36 | W | A | 0.0000 | |
| 37 | Y | A | -0.9394 | |
| 38 | R | A | -1.7181 | |
| 39 | Q | A | -2.4923 | |
| 40 | A | A | -2.2386 | |
| 41 | P | A | -1.4534 | |
| 42 | G | A | -1.9892 | |
| 43 | K | A | -3.5876 | |
| 44 | E | A | -3.9408 | |
| 45 | R | A | -3.4555 | |
| 46 | E | A | -3.1098 | |
| 47 | W | A | -1.2850 | |
| 48 | V | A | 0.0000 | |
| 49 | S | A | 0.0000 | |
| 50 | G | A | -0.7027 | |
| 51 | M | A | 0.0000 | |
| 52 | S | A | -1.6193 | |
| 53 | S | A | -1.4593 | |
| 54 | A | A | -1.5431 | |
| 55 | G | A | -2.4939 | |
| 56 | D | A | -2.9325 | |
| 57 | R | A | -2.9938 | |
| 58 | S | A | -1.6869 | |
| 59 | S | A | -1.2322 | |
| 60 | Y | A | -1.3493 | |
| 61 | E | A | -2.1675 | |
| 62 | D | A | -2.8081 | |
| 63 | S | A | -2.0524 | |
| 64 | V | A | 0.0000 | |
| 65 | K | A | -2.8397 | |
| 66 | G | A | -1.8769 | |
| 67 | R | A | -1.4290 | |
| 68 | F | A | 0.0000 | |
| 69 | T | A | -0.9306 | |
| 70 | S | A | -0.8108 | |
| 71 | S | A | -1.0787 | |
| 72 | R | A | -1.8664 | |
| 73 | D | A | -2.7618 | |
| 74 | D | A | -3.3834 | |
| 75 | A | A | -2.2124 | |
| 76 | R | A | -2.8969 | |
| 77 | N | A | -2.3214 | |
| 78 | T | A | 0.0000 | |
| 79 | V | A | 0.0000 | |
| 80 | Y | A | 0.0000 | |
| 81 | L | A | 0.0000 | |
| 82 | Q | A | -1.2508 | |
| 83 | M | A | 0.0000 | |
| 84 | N | A | -1.5498 | |
| 85 | S | A | -1.3359 | |
| 86 | L | A | 0.0000 | |
| 87 | K | A | -2.4039 | |
| 88 | P | A | -1.9346 | |
| 89 | E | A | -2.3552 | |
| 90 | D | A | 0.0000 | |
| 91 | T | A | -0.9124 | |
| 92 | A | A | 0.0000 | |
| 93 | V | A | -0.4722 | |
| 94 | Y | A | 0.0000 | |
| 95 | Y | A | -0.3880 | |
| 96 | S | A | 0.0000 | |
| 97 | N | A | 0.0000 | |
| 98 | V | A | 0.0000 | |
| 99 | N | A | -0.3839 | |
| 100 | V | A | 0.0357 | |
| 101 | G | A | 0.2573 | |
| 102 | F | A | 1.3417 | |
| 103 | E | A | 0.1773 | |
| 104 | Y | A | 0.1779 | |
| 105 | W | A | 0.2089 | |
| 106 | G | A | -0.0712 | |
| 107 | Q | A | -0.7700 | |
| 108 | G | A | 0.0000 | |
| 109 | T | A | -0.6548 | |
| 110 | Q | A | -0.9255 | |
| 111 | V | A | 0.0000 | |
| 112 | T | A | -0.1979 | |
| 113 | V | A | 0.0000 | |
| 114 | S | A | -0.6727 | |
| 115 | S | A | -0.5979 |