| Chain sequence(s) |
A: DAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLMVGGVVIA
C: DAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLMVGGVVIA B: DAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLMVGGVVIA D: DAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLMVGGVVIA input PDB |
| Selected Chain(s) | A,C,B,D |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:57)
[INFO] Main: Simulation completed successfully. (00:01:58)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | D | A | -2.0662 | |
| 2 | A | A | -1.3489 | |
| 3 | E | A | -2.5073 | |
| 4 | F | A | -0.8985 | |
| 5 | R | A | -2.8743 | |
| 6 | H | A | -2.5524 | |
| 7 | D | A | -2.7473 | |
| 8 | S | A | -1.6631 | |
| 9 | G | A | -1.9483 | |
| 10 | Y | A | -1.4150 | |
| 11 | E | A | -2.2993 | |
| 12 | V | A | -1.5229 | |
| 13 | H | A | -2.1889 | |
| 14 | H | A | -2.1854 | |
| 15 | Q | A | -1.5310 | |
| 16 | K | A | -1.4649 | |
| 17 | L | A | 0.0000 | |
| 18 | V | A | -0.7040 | |
| 19 | F | A | 0.0000 | |
| 20 | F | A | -1.4851 | |
| 21 | A | A | -1.5446 | |
| 22 | E | A | -2.4594 | |
| 23 | D | A | -2.0665 | |
| 24 | V | A | -1.1479 | |
| 25 | G | A | -1.1758 | |
| 26 | S | A | -1.2252 | |
| 27 | N | A | -1.1096 | |
| 28 | K | A | -1.0471 | |
| 29 | G | A | -0.7151 | |
| 30 | A | A | -0.4589 | |
| 31 | I | A | 0.0000 | |
| 32 | I | A | 0.0000 | |
| 33 | G | A | -0.1903 | |
| 34 | L | A | 0.8156 | |
| 35 | M | A | 0.0000 | |
| 36 | V | A | 0.0000 | |
| 37 | G | A | 0.1760 | |
| 38 | G | A | 1.0584 | |
| 39 | V | A | 2.6374 | |
| 40 | V | A | 2.8481 | |
| 41 | I | A | 1.9385 | |
| 42 | A | A | 1.4111 | |
| 1 | D | B | -2.2341 | |
| 2 | A | B | -1.4146 | |
| 3 | E | B | -2.5176 | |
| 4 | F | B | -0.8397 | |
| 5 | R | B | -2.7503 | |
| 6 | H | B | -2.4916 | |
| 7 | D | B | -2.6875 | |
| 8 | S | B | -1.6119 | |
| 9 | G | B | -1.8278 | |
| 10 | Y | B | -1.1455 | |
| 11 | E | B | -1.8760 | |
| 12 | V | B | -1.5691 | |
| 13 | H | B | -2.5472 | |
| 14 | H | B | -2.5928 | |
| 15 | Q | B | -2.2750 | |
| 16 | K | B | -2.1406 | |
| 17 | L | B | 0.0000 | |
| 18 | V | B | 0.0000 | |
| 19 | F | B | 0.0000 | |
| 20 | F | B | -1.0639 | |
| 21 | A | B | -1.2366 | |
| 22 | E | B | -2.3300 | |
| 23 | D | B | -2.0646 | |
| 24 | V | B | -1.0047 | |
| 25 | G | B | -1.1958 | |
| 26 | S | B | -1.2615 | |
| 27 | N | B | -1.1235 | |
| 28 | K | B | -1.0650 | |
| 29 | G | B | -0.7198 | |
| 30 | A | B | -0.4547 | |
| 31 | I | B | 0.0000 | |
| 32 | I | B | 0.0000 | |
| 33 | G | B | -0.1768 | |
| 34 | L | B | 0.7731 | |
| 35 | M | B | 0.0000 | |
| 36 | V | B | 0.0000 | |
| 37 | G | B | 0.2442 | |
| 38 | G | B | 1.0968 | |
| 39 | V | B | 2.6876 | |
| 40 | V | B | 2.9385 | |
| 41 | I | B | 1.9462 | |
| 42 | A | B | 1.4555 | |
| 1 | D | C | -2.1289 | |
| 2 | A | C | -1.4865 | |
| 3 | E | C | -2.6264 | |
| 4 | F | C | -0.9237 | |
| 5 | R | C | -2.8943 | |
| 6 | H | C | -2.5662 | |
| 7 | D | C | -2.7409 | |
| 8 | S | C | -1.6507 | |
| 9 | G | C | -1.9070 | |
| 10 | Y | C | -1.3347 | |
| 11 | E | C | -2.2173 | |
| 12 | V | C | -1.4626 | |
| 13 | H | C | -2.2199 | |
| 14 | H | C | -2.2564 | |
| 15 | Q | C | -1.6794 | |
| 16 | K | C | -1.4429 | |
| 17 | L | C | 0.0000 | |
| 18 | V | C | -0.6480 | |
| 19 | F | C | 0.0000 | |
| 20 | F | C | -1.2238 | |
| 21 | A | C | -1.3195 | |
| 22 | E | C | -2.3410 | |
| 23 | D | C | -2.0073 | |
| 24 | V | C | -0.9815 | |
| 25 | G | C | -1.1435 | |
| 26 | S | C | -1.2303 | |
| 27 | N | C | -1.1014 | |
| 28 | K | C | -1.0308 | |
| 29 | G | C | -0.7004 | |
| 30 | A | C | -0.4491 | |
| 31 | I | C | 0.0000 | |
| 32 | I | C | 0.0000 | |
| 33 | G | C | -0.1803 | |
| 34 | L | C | 0.8074 | |
| 35 | M | C | 0.0000 | |
| 36 | V | C | 0.0000 | |
| 37 | G | C | 0.2220 | |
| 38 | G | C | 1.1609 | |
| 39 | V | C | 2.7656 | |
| 40 | V | C | 3.0802 | |
| 41 | I | C | 2.3322 | |
| 42 | A | C | 1.6304 | |
| 1 | D | D | -2.0943 | |
| 2 | A | D | -1.3727 | |
| 3 | E | D | -2.5862 | |
| 4 | F | D | -0.8657 | |
| 5 | R | D | -2.9099 | |
| 6 | H | D | -2.5576 | |
| 7 | D | D | -2.7463 | |
| 8 | S | D | -1.6625 | |
| 9 | G | D | -1.8984 | |
| 10 | Y | D | -1.3379 | |
| 11 | E | D | -2.3380 | |
| 12 | V | D | -1.6327 | |
| 13 | H | D | -2.3045 | |
| 14 | H | D | -2.3095 | |
| 15 | Q | D | -1.7570 | |
| 16 | K | D | -1.7938 | |
| 17 | L | D | 0.0000 | |
| 18 | V | D | -0.6652 | |
| 19 | F | D | 0.0000 | |
| 20 | F | D | -1.1222 | |
| 21 | A | D | -1.2013 | |
| 22 | E | D | -2.3086 | |
| 23 | D | D | -1.9676 | |
| 24 | V | D | -1.0436 | |
| 25 | G | D | -1.1718 | |
| 26 | S | D | -1.2410 | |
| 27 | N | D | -1.1379 | |
| 28 | K | D | -1.0918 | |
| 29 | G | D | -0.7648 | |
| 30 | A | D | -0.4995 | |
| 31 | I | D | 0.0000 | |
| 32 | I | D | 0.0000 | |
| 33 | G | D | -0.2141 | |
| 34 | L | D | 0.7611 | |
| 35 | M | D | 0.0000 | |
| 36 | V | D | 0.0000 | |
| 37 | G | D | 0.2180 | |
| 38 | G | D | 1.0727 | |
| 39 | V | D | 2.6258 | |
| 40 | V | D | 2.8297 | |
| 41 | I | D | 2.0486 | |
| 42 | A | D | 1.3675 |