Project name: fibril

Status: done

Started: 2025-02-04 23:25:04
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Chain sequence(s) B: GPWANICAGKSSNEIRTCDRHGCGQYSAQRSQRPHQGVDVLCSAGSTVYAPFTGMIVGQEKPYQNKNAINNGVRISGRGFCVKMFYIKPIKYKGPIKKGEKLGTLLPLQKVYPGIQSHVHIENCDSSDPTAYL
input PDB
Selected Chain(s) B
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with B chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:14)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:15)
Show buried residues

Minimal score value
-3.5712
Maximal score value
3.0071
Average score
-0.4027
Total score value
-53.557

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 G B -0.3028
2 P B -0.1548
3 W B 0.6746
4 A B 0.2733
5 N B -0.4525
6 I B 0.8186
7 C B 0.4638
8 A B -0.5473
9 G B -1.4921
10 K B -2.2118
11 S B -1.5532
12 S B -1.7527
13 N B -2.0140
14 E B -1.9378
15 I B 0.0517
16 R B -1.6352
17 T B -1.0602
18 C B -1.5844
19 D B -3.2347
20 R B -3.1555
21 H B -2.5408
22 G B -1.8311
23 C B -0.8675
24 G B -1.2656
25 Q B -0.9494
26 Y B 0.3148
27 S B -0.1107
28 A B -1.3413
29 Q B -2.3365
30 R B -2.7349
31 S B -2.2829
32 Q B -2.8684
33 R B -2.7838
34 P B -2.5376
35 H B -2.3642
36 Q B -1.7678
37 G B -0.9119
38 V B 0.1160
39 D B -0.7452
40 V B 1.7837
41 L B 1.9818
42 C B 1.4956
43 S B 0.8733
44 A B 0.8721
45 G B 0.0277
46 S B 0.1501
47 T B 0.9061
48 V B 2.4856
49 Y B 2.2727
50 A B 1.4659
51 P B 1.2106
52 F B 1.6872
53 T B 0.8036
54 G B 1.0325
55 M B 1.7181
56 I B 2.3421
57 V B 1.1560
58 G B -0.5986
59 Q B -2.2463
60 E B -2.7934
61 K B -2.8488
62 P B -2.0083
63 Y B -0.5893
64 Q B -1.7967
65 N B -2.6558
66 K B -3.0703
67 N B -1.9493
68 A B -0.3984
69 I B 0.9397
70 N B -0.7726
71 N B -1.0896
72 G B -0.4248
73 V B -0.2030
74 R B -0.8504
75 I B 0.9596
76 S B -0.2436
77 G B -0.9899
78 R B -1.1794
79 G B 0.2797
80 F B 1.5845
81 C B 0.9142
82 V B 1.2633
83 K B 0.3352
84 M B 1.7218
85 F B 3.0071
86 Y B 2.9877
87 I B 2.1588
88 K B -0.2184
89 P B 0.1031
90 I B 0.8237
91 K B -0.7587
92 Y B 0.0354
93 K B -1.2669
94 G B -0.8609
95 P B 0.1927
96 I B 0.3803
97 K B -2.0173
98 K B -3.0501
99 G B -2.9974
100 E B -3.5712
101 K B -2.4395
102 L B -0.3159
103 G B -0.2930
104 T B 0.8015
105 L B 2.2223
106 L B 2.1713
107 P B 1.1750
108 L B 1.4353
109 Q B -0.6748
110 K B -0.6724
111 V B 1.3874
112 Y B 1.3866
113 P B 0.3503
114 G B -0.1481
115 I B -0.0417
116 Q B -1.0539
117 S B -0.6492
118 H B -0.8083
119 V B 0.4860
120 H B -0.2024
121 I B 0.3340
122 E B -1.6134
123 N B -1.1744
124 C B -0.7796
125 D B -2.3355
126 S B -1.3184
127 S B -1.7158
128 D B -2.3269
129 P B -1.4303
130 T B -0.5135
131 A B 1.0581
132 Y B 2.1466
133 L B 2.1093
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Laboratory of Theory of Biopolymers 2018