| Chain sequence(s) |
A: FGKGHGF
C: FGKGHGF B: FGKGHGF D: FGKGHGF input PDB |
| Selected Chain(s) | A,C,B,D |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:38)
[INFO] Main: Simulation completed successfully. (00:00:40)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | F | A | 2.1436 | |
| 2 | G | A | 0.2006 | |
| 3 | K | A | -1.0378 | |
| 4 | G | A | -1.2604 | |
| 5 | H | A | -0.0578 | |
| 6 | G | A | 0.6949 | |
| 7 | F | A | 2.7501 | |
| 1 | F | B | 1.5946 | |
| 2 | G | B | -0.3669 | |
| 3 | K | B | -1.4752 | |
| 4 | G | B | -1.7207 | |
| 5 | H | B | -0.3778 | |
| 6 | G | B | 0.5472 | |
| 7 | F | B | 2.4885 | |
| 1 | F | C | 2.2298 | |
| 2 | G | C | 0.2372 | |
| 3 | K | C | -0.3581 | |
| 4 | G | C | -1.1851 | |
| 5 | H | C | -0.2006 | |
| 6 | G | C | 0.6495 | |
| 7 | F | C | 2.7326 | |
| 1 | F | D | 2.2440 | |
| 2 | G | D | 0.7013 | |
| 3 | K | D | -0.0456 | |
| 4 | G | D | -0.8348 | |
| 5 | H | D | -0.0575 | |
| 6 | G | D | 0.7458 | |
| 7 | F | D | 2.5200 |