Project name: Acidic peptide_12

Status: done

Started: 2026-06-25 07:04:23
Settings
Chain sequence(s) A: EDEDEDEDEDED
C: EDEDEDEDEDED
B: EDEDEDEDEDED
E: EDEDEDEDEDED
D: EDEDEDEDEDED
G: EDEDEDEDEDED
F: EDEDEDEDEDED
I: EDEDEDEDEDED
H: EDEDEDEDEDED
K: EDEDEDEDEDED
J: EDEDEDEDEDED
L: EDEDEDEDEDED
input PDB
Selected Chain(s) A,C,B,E,D,G,F,I,H,K,J,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:04:58)
[INFO]       Main:     Simulation completed successfully.                                          (00:05:00)
Show buried residues

Minimal score value
-7.3953
Maximal score value
0.0
Average score
-4.931
Total score value
-710.0603

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 E A -4.1173
2 D A -4.7747
3 E A -6.0404
4 D A -5.6153
5 E A -6.1865
6 D A -6.1229
7 E A -6.0036
8 D A 0.0000
9 E A -5.6309
10 D A -5.5288
11 E A -4.6916
12 D A -4.2298
1 E B -3.5470
2 D B -4.3333
3 E B -4.8848
4 D B -5.1577
5 E B -5.9191
6 D B -6.8925
7 E B -7.3953
8 D B -7.0471
9 E B -6.0007
10 D B -5.1169
11 E B -4.1987
12 D B -3.3982
1 E C -3.7771
2 D C -4.2702
3 E C -4.7274
4 D C -4.9099
5 E C -5.0886
6 D C -5.5535
7 E C -5.5465
8 D C -5.5175
9 E C -5.2237
10 D C -5.3498
11 E C -5.2520
12 D C -4.1948
1 E D -3.0926
2 D D -4.2347
3 E D -4.4472
4 D D -5.6990
5 E D -5.3595
6 D D 0.0000
7 E D -6.0527
8 D D -4.9803
9 E D -4.8657
10 D D -4.4069
11 E D -4.8703
12 D D -3.8932
1 E E -3.4353
2 D E -3.8845
3 E E -4.9486
4 D E -5.3789
5 E E -5.7020
6 D E -5.7887
7 E E -5.5889
8 D E -5.7725
9 E E -5.6264
10 D E -5.3341
11 E E -4.7877
12 D E -3.5587
1 E F -6.1359
2 D F -5.7696
3 E F -5.7848
4 D F -4.5365
5 E F -4.7622
6 D F 0.0000
7 E F -5.1281
8 D F -5.6997
9 E F -5.3759
10 D F -5.4125
11 E F -4.1485
12 D F -3.6191
1 E G -4.1858
2 D G -4.2587
3 E G -5.4212
4 D G -5.4124
5 E G -5.1372
6 D G -4.7525
7 E G -4.9717
8 D G -5.5081
9 E G -5.3097
10 D G -5.1935
11 E G -4.5538
12 D G -4.0069
1 E H -4.1158
2 D H -5.0145
3 E H -5.8606
4 D H -6.4449
5 E H -6.2150
6 D H -5.4460
7 E H -5.6161
8 D H -5.3576
9 E H -5.3977
10 D H -5.0438
11 E H -4.5212
12 D H -3.4949
1 E I -4.6665
2 D I -5.5830
3 E I -5.6871
4 D I -5.7153
5 E I -5.5360
6 D I -5.1244
7 E I -5.6667
8 D I -5.0758
9 E I -5.8256
10 D I -4.8841
11 E I -5.3024
12 D I -3.6157
1 E J -6.0883
2 D J -5.7972
3 E J 0.0000
4 D J -5.8002
5 E J -5.4258
6 D J -4.8552
7 E J -4.9392
8 D J -5.0379
9 E J -5.9827
10 D J -6.7800
11 E J -7.2961
12 D J -6.2427
1 E K -3.9199
2 D K -5.9058
3 E K -5.7022
4 D K -6.5777
5 E K -6.1943
6 D K -6.3156
7 E K -6.2339
8 D K -5.7068
9 E K 0.0000
10 D K -4.5301
11 E K -3.9906
12 D K -3.3763
1 E L -4.0342
2 D L -4.4739
3 E L -5.1236
4 D L -4.5485
5 E L -4.7293
6 D L -4.7859
7 E L -4.9216
8 D L -5.1020
9 E L -4.6830
10 D L -4.1077
11 E L -3.7366
12 D L -2.8680
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Laboratory of Theory of Biopolymers 2018