| Chain sequence(s) |
A: EDEDEDEDEDED
C: EDEDEDEDEDED B: EDEDEDEDEDED E: EDEDEDEDEDED D: EDEDEDEDEDED G: EDEDEDEDEDED F: EDEDEDEDEDED I: EDEDEDEDEDED H: EDEDEDEDEDED K: EDEDEDEDEDED J: EDEDEDEDEDED L: EDEDEDEDEDED input PDB |
| Selected Chain(s) | A,C,B,E,D,G,F,I,H,K,J,L |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:04:58)
[INFO] Main: Simulation completed successfully. (00:05:00)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | E | A | -4.1173 | |
| 2 | D | A | -4.7747 | |
| 3 | E | A | -6.0404 | |
| 4 | D | A | -5.6153 | |
| 5 | E | A | -6.1865 | |
| 6 | D | A | -6.1229 | |
| 7 | E | A | -6.0036 | |
| 8 | D | A | 0.0000 | |
| 9 | E | A | -5.6309 | |
| 10 | D | A | -5.5288 | |
| 11 | E | A | -4.6916 | |
| 12 | D | A | -4.2298 | |
| 1 | E | B | -3.5470 | |
| 2 | D | B | -4.3333 | |
| 3 | E | B | -4.8848 | |
| 4 | D | B | -5.1577 | |
| 5 | E | B | -5.9191 | |
| 6 | D | B | -6.8925 | |
| 7 | E | B | -7.3953 | |
| 8 | D | B | -7.0471 | |
| 9 | E | B | -6.0007 | |
| 10 | D | B | -5.1169 | |
| 11 | E | B | -4.1987 | |
| 12 | D | B | -3.3982 | |
| 1 | E | C | -3.7771 | |
| 2 | D | C | -4.2702 | |
| 3 | E | C | -4.7274 | |
| 4 | D | C | -4.9099 | |
| 5 | E | C | -5.0886 | |
| 6 | D | C | -5.5535 | |
| 7 | E | C | -5.5465 | |
| 8 | D | C | -5.5175 | |
| 9 | E | C | -5.2237 | |
| 10 | D | C | -5.3498 | |
| 11 | E | C | -5.2520 | |
| 12 | D | C | -4.1948 | |
| 1 | E | D | -3.0926 | |
| 2 | D | D | -4.2347 | |
| 3 | E | D | -4.4472 | |
| 4 | D | D | -5.6990 | |
| 5 | E | D | -5.3595 | |
| 6 | D | D | 0.0000 | |
| 7 | E | D | -6.0527 | |
| 8 | D | D | -4.9803 | |
| 9 | E | D | -4.8657 | |
| 10 | D | D | -4.4069 | |
| 11 | E | D | -4.8703 | |
| 12 | D | D | -3.8932 | |
| 1 | E | E | -3.4353 | |
| 2 | D | E | -3.8845 | |
| 3 | E | E | -4.9486 | |
| 4 | D | E | -5.3789 | |
| 5 | E | E | -5.7020 | |
| 6 | D | E | -5.7887 | |
| 7 | E | E | -5.5889 | |
| 8 | D | E | -5.7725 | |
| 9 | E | E | -5.6264 | |
| 10 | D | E | -5.3341 | |
| 11 | E | E | -4.7877 | |
| 12 | D | E | -3.5587 | |
| 1 | E | F | -6.1359 | |
| 2 | D | F | -5.7696 | |
| 3 | E | F | -5.7848 | |
| 4 | D | F | -4.5365 | |
| 5 | E | F | -4.7622 | |
| 6 | D | F | 0.0000 | |
| 7 | E | F | -5.1281 | |
| 8 | D | F | -5.6997 | |
| 9 | E | F | -5.3759 | |
| 10 | D | F | -5.4125 | |
| 11 | E | F | -4.1485 | |
| 12 | D | F | -3.6191 | |
| 1 | E | G | -4.1858 | |
| 2 | D | G | -4.2587 | |
| 3 | E | G | -5.4212 | |
| 4 | D | G | -5.4124 | |
| 5 | E | G | -5.1372 | |
| 6 | D | G | -4.7525 | |
| 7 | E | G | -4.9717 | |
| 8 | D | G | -5.5081 | |
| 9 | E | G | -5.3097 | |
| 10 | D | G | -5.1935 | |
| 11 | E | G | -4.5538 | |
| 12 | D | G | -4.0069 | |
| 1 | E | H | -4.1158 | |
| 2 | D | H | -5.0145 | |
| 3 | E | H | -5.8606 | |
| 4 | D | H | -6.4449 | |
| 5 | E | H | -6.2150 | |
| 6 | D | H | -5.4460 | |
| 7 | E | H | -5.6161 | |
| 8 | D | H | -5.3576 | |
| 9 | E | H | -5.3977 | |
| 10 | D | H | -5.0438 | |
| 11 | E | H | -4.5212 | |
| 12 | D | H | -3.4949 | |
| 1 | E | I | -4.6665 | |
| 2 | D | I | -5.5830 | |
| 3 | E | I | -5.6871 | |
| 4 | D | I | -5.7153 | |
| 5 | E | I | -5.5360 | |
| 6 | D | I | -5.1244 | |
| 7 | E | I | -5.6667 | |
| 8 | D | I | -5.0758 | |
| 9 | E | I | -5.8256 | |
| 10 | D | I | -4.8841 | |
| 11 | E | I | -5.3024 | |
| 12 | D | I | -3.6157 | |
| 1 | E | J | -6.0883 | |
| 2 | D | J | -5.7972 | |
| 3 | E | J | 0.0000 | |
| 4 | D | J | -5.8002 | |
| 5 | E | J | -5.4258 | |
| 6 | D | J | -4.8552 | |
| 7 | E | J | -4.9392 | |
| 8 | D | J | -5.0379 | |
| 9 | E | J | -5.9827 | |
| 10 | D | J | -6.7800 | |
| 11 | E | J | -7.2961 | |
| 12 | D | J | -6.2427 | |
| 1 | E | K | -3.9199 | |
| 2 | D | K | -5.9058 | |
| 3 | E | K | -5.7022 | |
| 4 | D | K | -6.5777 | |
| 5 | E | K | -6.1943 | |
| 6 | D | K | -6.3156 | |
| 7 | E | K | -6.2339 | |
| 8 | D | K | -5.7068 | |
| 9 | E | K | 0.0000 | |
| 10 | D | K | -4.5301 | |
| 11 | E | K | -3.9906 | |
| 12 | D | K | -3.3763 | |
| 1 | E | L | -4.0342 | |
| 2 | D | L | -4.4739 | |
| 3 | E | L | -5.1236 | |
| 4 | D | L | -4.5485 | |
| 5 | E | L | -4.7293 | |
| 6 | D | L | -4.7859 | |
| 7 | E | L | -4.9216 | |
| 8 | D | L | -5.1020 | |
| 9 | E | L | -4.6830 | |
| 10 | D | L | -4.1077 | |
| 11 | E | L | -3.7366 | |
| 12 | D | L | -2.8680 |