| Chain sequence(s) |
H: QIQLVQSGPELKKPGETVKISCKASGYTFTTYGMSWVKQAPGKGLKWMGWIYTYSGVPTYADDLEGRFAFSLETSASTAYLQINNLKNEDTATYFCARVRDGYYRYAMDYWGQGTSVTVSS
L: DIHMTQSPSSLSASLGGKVTITCKASQDINRYIAWYQHKPGKGPRLLIHFTSTLQSGIPSRFSGSGSGRDYSFSISNLEPEDIATYYCLQYDDLRTFGGGTKLEIK input PDB |
| Selected Chain(s) | H,L |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:40)
[INFO] Main: Simulation completed successfully. (00:01:41)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | H | -1.4094 | |
| 2 | I | H | -0.7695 | |
| 3 | Q | H | -0.8854 | |
| 4 | L | H | 0.0000 | |
| 5 | V | H | 0.4694 | |
| 6 | Q | H | 0.0000 | |
| 7 | S | H | -0.5526 | |
| 8 | G | H | -0.7665 | |
| 9 | P | H | -0.4978 | |
| 11 | E | H | -0.2792 | |
| 12 | L | H | 0.5592 | |
| 13 | K | H | -1.1993 | |
| 14 | K | H | -2.6186 | |
| 15 | P | H | -2.7990 | |
| 16 | G | H | -2.5542 | |
| 17 | E | H | -2.3448 | |
| 18 | T | H | -1.8572 | |
| 19 | V | H | 0.0000 | |
| 20 | K | H | -1.2999 | |
| 21 | I | H | 0.0000 | |
| 22 | S | H | -0.3336 | |
| 23 | C | H | 0.0000 | |
| 24 | K | H | -0.4957 | |
| 25 | A | H | 0.0000 | |
| 26 | S | H | -0.6619 | |
| 27 | G | H | -0.9424 | |
| 28 | Y | H | -0.3361 | |
| 29 | T | H | -0.0715 | |
| 30 | F | H | 0.0000 | |
| 35 | T | H | 0.5780 | |
| 36 | T | H | 0.0119 | |
| 37 | Y | H | -0.1461 | |
| 38 | G | H | 0.0000 | |
| 39 | M | H | 0.0000 | |
| 40 | S | H | 0.0000 | |
| 41 | W | H | 0.0000 | |
| 42 | V | H | 0.0000 | |
| 43 | K | H | -0.8726 | |
| 44 | Q | H | -1.1539 | |
| 45 | A | H | -1.4273 | |
| 46 | P | H | -1.3069 | |
| 47 | G | H | -1.4570 | |
| 48 | K | H | -2.3452 | |
| 49 | G | H | -1.5421 | |
| 50 | L | H | 0.0000 | |
| 51 | K | H | -1.5698 | |
| 52 | W | H | 0.0000 | |
| 53 | M | H | 0.0000 | |
| 54 | G | H | 0.0000 | |
| 55 | W | H | 0.7013 | |
| 56 | I | H | 0.0000 | |
| 57 | Y | H | 1.4880 | |
| 58 | T | H | 0.0000 | |
| 59 | Y | H | 1.6499 | |
| 62 | S | H | 1.0965 | |
| 63 | G | H | 1.1253 | |
| 64 | V | H | 2.0290 | |
| 65 | P | H | 1.0179 | |
| 66 | T | H | 0.6140 | |
| 67 | Y | H | -0.3044 | |
| 68 | A | H | 0.0000 | |
| 69 | D | H | -3.1342 | |
| 70 | D | H | -3.2538 | |
| 71 | L | H | 0.0000 | |
| 72 | E | H | -2.9098 | |
| 74 | G | H | -1.8203 | |
| 75 | R | H | -1.4863 | |
| 76 | F | H | 0.0000 | |
| 77 | A | H | -0.2994 | |
| 78 | F | H | 0.0000 | |
| 79 | S | H | 0.1776 | |
| 80 | L | H | 0.2206 | |
| 81 | E | H | -0.5642 | |
| 82 | T | H | -0.2668 | |
| 83 | S | H | -0.3609 | |
| 84 | A | H | -0.4104 | |
| 85 | S | H | -0.5042 | |
| 86 | T | H | 0.0000 | |
| 87 | A | H | 0.0000 | |
| 88 | Y | H | -0.2317 | |
| 89 | L | H | 0.0000 | |
| 90 | Q | H | -0.8331 | |
| 91 | I | H | 0.0000 | |
| 92 | N | H | -1.6993 | |
| 93 | N | H | -2.4568 | |
| 94 | L | H | 0.0000 | |
| 95 | K | H | -3.1222 | |
| 96 | N | H | -3.0141 | |
| 97 | E | H | -2.7968 | |
| 98 | D | H | 0.0000 | |
| 99 | T | H | -1.2067 | |
| 100 | A | H | 0.0000 | |
| 101 | T | H | -0.5211 | |
| 102 | Y | H | 0.0000 | |
| 103 | F | H | 0.0000 | |
| 104 | C | H | 0.0000 | |
| 105 | A | H | 0.0000 | |
| 106 | R | H | 0.0000 | |
| 107 | V | H | 0.0000 | |
| 108 | R | H | -1.0717 | |
| 109 | D | H | -1.6857 | |
| 110 | G | H | -0.5571 | |
| 111 | Y | H | 0.8027 | |
| 112A | Y | H | 0.5900 | |
| 112 | R | H | -0.1679 | |
| 113 | Y | H | -0.0955 | |
| 114 | A | H | 0.0000 | |
| 115 | M | H | 0.0000 | |
| 116 | D | H | 0.0000 | |
| 117 | Y | H | 0.0268 | |
| 118 | W | H | 0.0000 | |
| 119 | G | H | 0.0000 | |
| 120 | Q | H | -1.5195 | |
| 121 | G | H | -0.9883 | |
| 122 | T | H | 0.0000 | |
| 123 | S | H | -0.4602 | |
| 124 | V | H | 0.0000 | |
| 125 | T | H | -0.6229 | |
| 126 | V | H | 0.0000 | |
| 127 | S | H | -1.1458 | |
| 128 | S | H | -1.0078 | |
| 1 | D | L | -2.8394 | |
| 2 | I | L | 0.0000 | |
| 3 | H | L | -1.7974 | |
| 4 | M | L | 0.0000 | |
| 5 | T | L | -1.0083 | |
| 6 | Q | L | -0.7006 | |
| 7 | S | L | -0.4748 | |
| 8 | P | L | -0.5737 | |
| 9 | S | L | -0.8725 | |
| 10 | S | L | -1.1757 | |
| 11 | L | L | -0.7248 | |
| 12 | S | L | -0.9894 | |
| 13 | A | L | -0.9909 | |
| 14 | S | L | -1.2192 | |
| 15 | L | L | -0.4011 | |
| 16 | G | L | -1.2671 | |
| 17 | G | L | -1.5937 | |
| 18 | K | L | -2.2044 | |
| 19 | V | L | 0.0000 | |
| 20 | T | L | -0.4289 | |
| 21 | I | L | 0.0000 | |
| 22 | T | L | -0.7273 | |
| 23 | C | L | 0.0000 | |
| 24 | K | L | -2.6144 | |
| 25 | A | L | 0.0000 | |
| 26 | S | L | -2.2142 | |
| 27 | Q | L | -3.0790 | |
| 28 | D | L | -3.5232 | |
| 29 | I | L | 0.0000 | |
| 36 | N | L | -2.5451 | |
| 37 | R | L | -2.4018 | |
| 38 | Y | L | -1.1130 | |
| 39 | I | L | 0.0000 | |
| 40 | A | L | 0.0000 | |
| 41 | W | L | 0.0000 | |
| 42 | Y | L | 0.0000 | |
| 43 | Q | L | 0.0000 | |
| 44 | H | L | -1.0589 | |
| 45 | K | L | -1.4616 | |
| 46 | P | L | -1.0467 | |
| 47 | G | L | -1.7246 | |
| 48 | K | L | -2.6017 | |
| 49 | G | L | -1.7021 | |
| 50 | P | L | 0.0000 | |
| 51 | R | L | -1.0515 | |
| 52 | L | L | 0.0000 | |
| 53 | L | L | 0.0000 | |
| 54 | I | L | 0.0000 | |
| 55 | H | L | 0.0000 | |
| 56 | F | L | -0.1122 | |
| 57 | T | L | 0.0000 | |
| 65 | S | L | -0.2302 | |
| 66 | T | L | 0.1283 | |
| 67 | L | L | 0.2562 | |
| 68 | Q | L | -0.2038 | |
| 69 | S | L | -0.3323 | |
| 70 | G | L | -0.4736 | |
| 71 | I | L | -0.2411 | |
| 72 | P | L | -0.2919 | |
| 74 | S | L | -0.5035 | |
| 75 | R | L | -1.0997 | |
| 76 | F | L | 0.0000 | |
| 77 | S | L | -0.3185 | |
| 78 | G | L | -0.2054 | |
| 79 | S | L | -0.7556 | |
| 80 | G | L | -1.6441 | |
| 83 | S | L | -2.1820 | |
| 84 | G | L | -2.9553 | |
| 85 | R | L | -4.0953 | |
| 86 | D | L | -3.5380 | |
| 87 | Y | L | 0.0000 | |
| 88 | S | L | -0.7367 | |
| 89 | F | L | 0.0000 | |
| 90 | S | L | -0.6942 | |
| 91 | I | L | 0.0000 | |
| 92 | S | L | -1.7670 | |
| 93 | N | L | -2.1747 | |
| 94 | L | L | 0.0000 | |
| 95 | E | L | -1.5194 | |
| 96 | P | L | -1.2571 | |
| 97 | E | L | -1.7697 | |
| 98 | D | L | 0.0000 | |
| 99 | I | L | -0.1601 | |
| 100 | A | L | 0.0000 | |
| 101 | T | L | -0.9411 | |
| 102 | Y | L | 0.0000 | |
| 103 | Y | L | 0.0000 | |
| 104 | C | L | 0.0000 | |
| 105 | L | L | 0.0000 | |
| 106 | Q | L | 0.0000 | |
| 107 | Y | L | 0.0000 | |
| 108 | D | L | -1.8890 | |
| 114 | D | L | -2.3118 | |
| 115 | L | L | -1.2048 | |
| 116 | R | L | -0.9204 | |
| 117 | T | L | -1.0568 | |
| 118 | F | L | -0.3885 | |
| 119 | G | L | 0.0000 | |
| 120 | G | L | -0.9715 | |
| 121 | G | L | -1.0493 | |
| 122 | T | L | 0.0000 | |
| 123 | K | L | -2.0481 | |
| 124 | L | L | 0.0000 | |
| 125 | E | L | -2.0219 | |
| 126 | I | L | -1.0512 | |
| 127 | K | L | -1.7332 |