| Chain sequence(s) |
A: RGDGWKPFVIAAAVLAALATAIAAIKLVFF
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 5 Å |
| FoldX usage | No |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] runJob: FoldX not utilized. Treating input pdb file as it was already optimized. (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:01)
[INFO] Main: Simulation completed successfully. (00:00:02)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | R | A | -1.9264 | |
| 2 | G | A | -1.0890 | |
| 3 | D | A | -1.8110 | |
| 4 | G | A | -0.5358 | |
| 5 | W | A | 0.9040 | |
| 6 | K | A | -0.9360 | |
| 7 | P | A | -0.0712 | |
| 8 | F | A | 2.1438 | |
| 9 | V | A | 2.0629 | |
| 10 | I | A | 2.2706 | |
| 11 | A | A | 0.4435 | |
| 12 | A | A | 0.0738 | |
| 13 | A | A | 0.3379 | |
| 14 | V | A | 1.6811 | |
| 15 | L | A | 1.8165 | |
| 16 | A | A | 0.3585 | |
| 17 | A | A | 0.3696 | |
| 18 | L | A | 1.5699 | |
| 19 | A | A | 0.3322 | |
| 20 | T | A | -0.0538 | |
| 21 | A | A | 0.4072 | |
| 22 | I | A | 2.0277 | |
| 23 | A | A | 0.4361 | |
| 24 | A | A | 0.4242 | |
| 25 | I | A | 1.6139 | |
| 26 | K | A | -1.0181 | |
| 27 | L | A | 1.5533 | |
| 28 | V | A | 2.4390 | |
| 29 | F | A | 2.6221 | |
| 30 | F | A | 2.2814 |