Project name: Pep5-Mut19-KLVFF

Status: done

Started: 2026-02-11 06:51:04
Settings
Chain sequence(s) A: RGDGWKPFVIAAAVLAALATAIAAIKLVFF
input PDB
Selected Chain(s) A
Distance of aggregation 5 Å
FoldX usage No
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       runJob:   FoldX not utilized. Treating input pdb file as it was already optimized.    (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:01)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:02)
Show buried residues

Minimal score value
-1.9264
Maximal score value
2.6221
Average score
0.6909
Total score value
20.7279

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 R A -1.9264
2 G A -1.0890
3 D A -1.8110
4 G A -0.5358
5 W A 0.9040
6 K A -0.9360
7 P A -0.0712
8 F A 2.1438
9 V A 2.0629
10 I A 2.2706
11 A A 0.4435
12 A A 0.0738
13 A A 0.3379
14 V A 1.6811
15 L A 1.8165
16 A A 0.3585
17 A A 0.3696
18 L A 1.5699
19 A A 0.3322
20 T A -0.0538
21 A A 0.4072
22 I A 2.0277
23 A A 0.4361
24 A A 0.4242
25 I A 1.6139
26 K A -1.0181
27 L A 1.5533
28 V A 2.4390
29 F A 2.6221
30 F A 2.2814
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Laboratory of Theory of Biopolymers 2018