Project name: af17db204c45719 [mutate: KM135A, KV26A]

Status: done

Started: 2024-07-03 16:57:09
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Chain sequence(s) A: PALPEDGGSGAFPPGHFKDPKMLYCKNGGFFLRIHPDGRVDGVREKSDPHIKLQLQAEERGVVSIKGVCANRYLAMKEDGRLLAHKLVTDECFFFERLESNNYNTYRSRKYTSWYVALKRTGQYKLGSKTGPGQKAILFLPMSAKS
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Mutated residues KV26A,KM135A
Energy difference between WT (input) and mutated protein (by FoldX) 1.27211 kcal/mol

CAUTION: Your mutation/s can destabilize the protein structure

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Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       FoldX:    Building mutant model                                                       (00:02:23)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:02:43)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:03:44)
[INFO]       Main:     Simulation completed successfully.                                          (00:03:45)
Show buried residues

Minimal score value
-3.6155
Maximal score value
0.9388
Average score
-0.9194
Total score value
-134.2352

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 P A 0.1362
2 A A -0.0449
3 L A 0.3576
4 P A -1.1937
5 E A -2.4623
6 D A -2.8085
7 G A -1.9870
8 G A -1.9720
9 S A -0.9500
10 G A -1.2632
11 A A -0.1813
12 F A 0.4881
13 P A 0.0517
14 P A -0.2910
15 G A -0.6690
16 H A -0.8403
17 F A 0.0957
18 K A -1.5647
19 D A -1.6371
20 P A -1.3094
21 K A -0.8898
22 M A 0.0000
23 L A 0.0000
24 Y A 0.3612
25 C A 0.0000
26 V A 0.9388 mutated: KV26A
27 N A -0.2186
28 G A -0.9392
29 G A -0.6042
30 F A -1.2735
31 F A 0.0000
32 L A 0.0000
33 R A -1.1591
34 I A 0.0000
35 H A -1.8087
36 P A -2.0114
37 D A -2.8411
38 G A 0.0000
39 R A -2.6847
40 V A 0.0000
41 D A -1.2037
42 G A -1.2823
43 V A -1.7875
44 R A -3.0699
45 E A -3.6155
46 K A -3.2586
47 S A -2.1343
48 D A -1.9367
49 P A -0.9204
50 H A -0.7560
51 I A 0.0000
52 K A -1.1841
53 L A 0.0000
54 Q A -1.1565
55 L A -0.7895
56 Q A -1.1742
57 A A -1.0967
58 E A -1.8662
59 E A -2.6402
60 R A -2.6853
61 G A -1.7959
62 V A 0.0000
63 V A 0.0000
64 S A 0.0000
65 I A 0.0000
66 K A -1.0365
67 G A 0.0000
68 V A -0.0790
69 C A 0.0482
70 A A -1.3912
71 N A -1.6987
72 R A -1.6040
73 Y A -0.3529
74 L A 0.0000
75 A A 0.0000
76 M A 0.0000
77 K A -2.9378
78 E A -3.5513
79 D A -3.3436
80 G A 0.0000
81 R A -2.6622
82 L A 0.0000
83 L A -1.0927
84 A A 0.0000
85 H A -1.0001
86 K A -1.5169
87 L A 0.8605
88 V A 0.7443
89 T A -0.3273
90 D A -2.3297
91 E A -1.9437
92 C A 0.0000
93 F A -1.2450
94 F A 0.0000
95 F A -1.2742
96 E A -1.1354
97 R A -1.2976
98 L A -0.1827
99 E A -1.3368
100 S A -1.3526
101 N A -1.8296
102 N A -1.7594
103 Y A -0.5591
104 N A -0.5907
105 T A 0.0000
106 Y A 0.0000
107 R A -1.2929
108 S A 0.0000
109 R A -2.5309
110 K A -3.0172
111 Y A 0.0000
112 T A -0.9148
113 S A -0.8720
114 W A -0.8959
115 Y A 0.0000
116 V A 0.0000
117 A A 0.0000
118 L A 0.0000
119 K A -1.8322
120 R A -2.2505
121 T A -1.5491
122 G A 0.0000
123 Q A -1.5305
124 Y A -1.3570
125 K A -1.4506
126 L A -1.5623
127 G A 0.0000
128 S A -1.7506
129 K A -1.7990
130 T A -1.0775
131 G A -0.7824
132 P A -0.5776
133 G A -0.6672
134 Q A -0.3258
135 M A 0.3429 mutated: KM135A
136 A A 0.0000
137 I A 0.0000
138 L A 0.0000
139 F A 0.0000
140 L A 0.6196
141 P A 0.2387
142 M A -0.0527
143 S A -0.8890
144 A A 0.0000
145 K A -2.0322
146 S A -1.1199
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Laboratory of Theory of Biopolymers 2018