Project name: 5G8-9

Status: done

Started: 2024-12-28 01:42:14
Settings
Chain sequence(s) A: MGQWVEQSPSSLSASVGDRVTITCVLRDSSCPLASTYWYFTKPGATKKESLSNGGRYAETVNKASKSFTLTISSLQPEDFATYYCKAVNSWTNCAPLERYYEGGGTKVEIK
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:53)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:54)
Show buried residues

Minimal score value
-2.9425
Maximal score value
0.6914
Average score
-0.7758
Total score value
-86.1132

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A 0.3233
2 G A -0.6067
3 Q A -1.3816
4 W A -1.4300
5 V A 0.0000
6 E A -2.4384
7 Q A -1.4182
8 S A -0.8244
9 P A -0.8142
10 S A -1.0075
11 S A -1.1066
12 L A -0.7426
13 S A -1.0707
14 A A 0.0000
15 S A -0.2473
16 V A 0.6914
17 G A -0.6247
18 D A -1.5700
19 R A -2.2553
20 V A 0.0000
21 T A -0.5316
22 I A 0.0000
23 T A -0.3875
24 C A 0.0000
25 V A -1.2739
26 L A 0.0000
27 R A -2.6854
28 D A -2.4471
29 S A -1.4974
30 S A -1.0901
31 C A 0.0000
32 P A -0.5834
33 L A 0.0000
34 A A -0.2633
35 S A 0.1657
36 T A 0.2811
37 Y A 0.2825
38 W A 0.0000
39 Y A -0.6798
40 F A -1.2494
41 T A -1.8945
42 K A -2.0535
43 P A -1.2330
44 G A -0.9919
45 A A -1.4608
46 T A -1.6198
47 K A -2.9185
48 K A -2.9425
49 E A -2.8921
50 S A -1.3727
51 L A -0.6841
52 S A -1.0536
53 N A -1.7160
54 G A -1.4628
55 G A -1.1698
56 R A -1.2850
57 Y A -0.9241
58 A A -0.9225
59 E A -0.6242
60 T A -0.4971
61 V A -0.4245
62 N A -1.5618
63 K A -1.7903
64 A A -1.0217
65 S A -1.0663
66 K A -1.2809
67 S A -1.0405
68 F A 0.0000
69 T A -0.1953
70 L A 0.0000
71 T A -0.7561
72 I A 0.0000
73 S A -1.3841
74 S A -1.1088
75 L A 0.0000
76 Q A -0.8230
77 P A -0.5319
78 E A -1.5624
79 D A 0.0000
80 F A -0.6605
81 A A 0.0000
82 T A -1.0968
83 Y A 0.0000
84 Y A -0.6774
85 C A 0.0000
86 K A -0.3589
87 A A 0.0000
88 V A 0.0000
89 N A 0.0000
90 S A -0.0806
91 W A 0.5291
92 T A -0.2572
93 N A -0.9687
94 C A -0.2870
95 A A 0.1276
96 P A 0.1002
97 L A 0.6176
98 E A -0.6505
99 R A -0.7441
100 Y A 0.1519
101 Y A 0.0000
102 E A -1.9151
103 G A -1.6579
104 G A -1.4474
105 G A 0.0000
106 T A 0.0000
107 K A -1.7388
108 V A 0.0000
109 E A -1.4005
110 I A 0.1800
111 K A -1.1290
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Laboratory of Theory of Biopolymers 2018