| Chain sequence(s) |
A: QVQLVESGGGLVQPGGSLRLSCAASGFTFSSYAMGWFRQAPGQGLEAVAAISSGSGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAADLRGAAGRVYEYNYWGQGTLVTVSS
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:26)
[INFO] Main: Simulation completed successfully. (00:01:27)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | A | -1.5432 | |
| 2 | V | A | -0.9737 | |
| 3 | Q | A | -1.0901 | |
| 4 | L | A | 0.0000 | |
| 5 | V | A | 1.1305 | |
| 6 | E | A | 0.3984 | |
| 7 | S | A | -0.0903 | |
| 8 | G | A | -0.6440 | |
| 9 | G | A | 0.1446 | |
| 10 | G | A | 0.6891 | |
| 11 | L | A | 1.3982 | |
| 12 | V | A | -0.1092 | |
| 13 | Q | A | -1.4433 | |
| 14 | P | A | -1.8082 | |
| 15 | G | A | -1.5249 | |
| 16 | G | A | -1.0044 | |
| 17 | S | A | -1.2887 | |
| 18 | L | A | -0.8930 | |
| 19 | R | A | -2.1238 | |
| 20 | L | A | 0.0000 | |
| 21 | S | A | -0.3877 | |
| 22 | C | A | 0.0000 | |
| 23 | A | A | -0.1367 | |
| 24 | A | A | 0.0000 | |
| 25 | S | A | -0.9377 | |
| 26 | G | A | -1.0635 | |
| 27 | F | A | -0.4653 | |
| 28 | T | A | -0.1662 | |
| 29 | F | A | 0.0000 | |
| 30 | S | A | -0.7818 | |
| 31 | S | A | -0.3543 | |
| 32 | Y | A | 0.0000 | |
| 33 | A | A | 0.0000 | |
| 34 | M | A | 0.0000 | |
| 35 | G | A | 0.0000 | |
| 36 | W | A | 0.0000 | |
| 37 | F | A | 0.3689 | |
| 38 | R | A | 0.0000 | |
| 39 | Q | A | -0.3704 | |
| 40 | A | A | -0.8272 | |
| 41 | P | A | -0.9393 | |
| 42 | G | A | -1.2235 | |
| 43 | Q | A | -1.6979 | |
| 44 | G | A | -0.9451 | |
| 45 | L | A | 0.2094 | |
| 46 | E | A | -0.4573 | |
| 47 | A | A | 0.1226 | |
| 48 | V | A | 0.0000 | |
| 49 | A | A | 0.0000 | |
| 50 | A | A | 0.3778 | |
| 51 | I | A | 0.0000 | |
| 52 | S | A | -0.5066 | |
| 53 | S | A | -0.6684 | |
| 54 | G | A | -0.7513 | |
| 55 | S | A | -0.6354 | |
| 56 | G | A | -0.5415 | |
| 57 | S | A | -0.2742 | |
| 58 | T | A | 0.3144 | |
| 59 | Y | A | 0.6799 | |
| 60 | Y | A | -0.3244 | |
| 61 | A | A | 0.0000 | |
| 62 | D | A | -2.3428 | |
| 63 | S | A | -1.7270 | |
| 64 | V | A | 0.0000 | |
| 65 | K | A | -2.4626 | |
| 66 | G | A | -1.7513 | |
| 67 | R | A | -1.5247 | |
| 68 | F | A | 0.0000 | |
| 69 | T | A | -0.7333 | |
| 70 | I | A | 0.0000 | |
| 71 | S | A | -0.4511 | |
| 72 | R | A | -1.2346 | |
| 73 | D | A | -1.9860 | |
| 74 | N | A | -2.1165 | |
| 75 | S | A | -1.8254 | |
| 76 | K | A | -2.5621 | |
| 77 | N | A | -1.9382 | |
| 78 | T | A | 0.0000 | |
| 79 | L | A | 0.0000 | |
| 80 | Y | A | -0.6598 | |
| 81 | L | A | 0.0000 | |
| 82 | Q | A | -1.2585 | |
| 83 | M | A | 0.0000 | |
| 84 | N | A | -1.5366 | |
| 85 | S | A | -1.3927 | |
| 86 | L | A | 0.0000 | |
| 87 | R | A | -2.9146 | |
| 88 | A | A | -2.0324 | |
| 89 | E | A | -2.4553 | |
| 90 | D | A | 0.0000 | |
| 91 | T | A | -0.4653 | |
| 92 | A | A | 0.0000 | |
| 93 | V | A | 1.0639 | |
| 94 | Y | A | 0.0000 | |
| 95 | Y | A | 0.5687 | |
| 96 | C | A | 0.0000 | |
| 97 | A | A | 0.0000 | |
| 98 | A | A | 0.0000 | |
| 99 | D | A | 0.0000 | |
| 100 | L | A | 0.3970 | |
| 101 | R | A | -1.0087 | |
| 102 | G | A | -0.8667 | |
| 103 | A | A | -0.7307 | |
| 104 | A | A | -0.7860 | |
| 105 | G | A | -1.0180 | |
| 106 | R | A | -1.3623 | |
| 107 | V | A | 0.6104 | |
| 108 | Y | A | 0.6122 | |
| 109 | E | A | -1.1140 | |
| 110 | Y | A | -0.4242 | |
| 111 | N | A | -1.0157 | |
| 112 | Y | A | -0.1334 | |
| 113 | W | A | 0.2732 | |
| 114 | G | A | 0.0197 | |
| 115 | Q | A | -0.8038 | |
| 116 | G | A | 0.1977 | |
| 117 | T | A | 0.6810 | |
| 118 | L | A | 1.7895 | |
| 119 | V | A | 0.0000 | |
| 120 | T | A | 0.3372 | |
| 121 | V | A | 0.0000 | |
| 122 | S | A | -0.7872 | |
| 123 | S | A | -0.5073 |