Project name: Zimberelimab

Status: done

Started: 2026-03-22 13:08:06
Settings
Chain sequence(s) H: QLQLQESGPGLVKPSETLTLTCTVSADSISSTTYYWVWIRQPPGKGLEWIGSISYSGSTYYNPSLKSRVTVSVDTSKNQFSLKLNSVAATDTALYYCARHLGYNGRYLPFDYWGQGTLVTVSS
L: QSALTQPASVSGSPGQSITISCTGTSSDVGFYNYVSWYQQHPGKAPELMIYDVSNRPSGVSDRFSGSKSGNTASLTISGLQAEDEADYYCSSYTSISTWVFGGGTKLTVL
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:46)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:47)
Show buried residues

Minimal score value
-2.5523
Maximal score value
1.8543
Average score
-0.3955
Total score value
-92.1502

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q H -1.5278
2 L H 0.0000
3 Q H -1.8411
4 L H 0.0000
5 Q H -1.5408
6 E H 0.0000
7 S H -0.5578
8 G H -0.4199
9 P H -0.0472
11 G H 0.3396
12 L H 0.9293
13 V H 0.0000
14 K H -1.2258
15 P H -1.2463
16 S H -1.3693
17 E H -2.0082
18 T H -1.5141
19 L H 0.0000
20 T H -0.8453
21 L H 0.0000
22 T H -0.5302
23 C H 0.0000
24 T H -1.1046
25 V H 0.0000
26 S H -1.1331
27 A H -0.6196
28 D H -0.7008
29 S H -0.4557
30 I H 0.0000
31 S H -0.1214
34 S H 0.0150
35 T H 0.2930
36 T H 0.4877
37 Y H 0.8010
38 Y H 0.6533
39 W H 0.0000
40 V H 0.0000
41 W H 0.0000
42 I H 0.0000
43 R H 0.0000
44 Q H -0.5905
45 P H -0.7542
46 P H -0.8714
47 G H -1.4581
48 K H -2.2974
49 G H -1.4402
50 L H 0.0000
51 E H -0.7869
52 W H 0.0000
53 I H 0.0000
54 G H 0.0000
55 S H 0.0000
56 I H 0.0000
57 S H 0.0000
58 Y H 0.3998
59 S H -0.0705
63 G H -0.2992
64 S H -0.0852
65 T H 0.2318
66 Y H 0.5465
67 Y H -0.1731
68 N H 0.0000
69 P H -0.6297
70 S H -0.9864
71 L H 0.0000
72 K H -1.8401
74 S H -1.3208
75 R H -1.4585
76 V H 0.0000
77 T H -0.8507
78 V H 0.0000
79 S H -0.3877
80 V H -0.4421
81 D H -1.2632
82 T H -1.0721
83 S H -1.3379
84 K H -2.2007
85 N H -1.5054
86 Q H -1.2892
87 F H 0.0000
88 S H -0.4857
89 L H 0.0000
90 K H -1.2978
91 L H 0.0000
92 N H -1.5302
93 S H -1.3611
94 V H 0.0000
95 A H -0.5534
96 A H -0.1886
97 T H -0.0866
98 D H 0.0000
99 T H 0.2748
100 A H 0.0000
101 L H 0.5473
102 Y H 0.0000
103 Y H 0.0000
104 C H 0.0000
105 A H 0.0000
106 R H 0.0000
107 H H 0.0000
108 L H 0.8065
109 G H 0.0000
110 Y H 0.7166
111 N H -0.9309
111A G H -0.9593
112A R H -0.9603
112 Y H 0.3103
113 L H 0.7139
114 P H 0.0000
115 F H 0.0000
116 D H -0.2597
117 Y H -0.3895
118 W H -0.8886
119 G H 0.0000
120 Q H -1.7497
121 G H 0.0000
122 T H 0.0217
123 L H 1.0196
124 V H 0.0000
125 T H 0.4369
126 V H 0.0000
127 S H -0.2700
128 S H -0.4380
1 Q L -0.8436
2 S L -0.6978
3 A L -0.5012
4 L L 0.0000
5 T L -0.3423
6 Q L -0.4920
7 P L -0.3666
8 A L -0.4399
9 S L -0.5458
11 V L -0.0433
12 S L 0.0047
13 G L 0.0000
14 S L -0.0099
15 P L -0.7102
16 G L -1.3733
17 Q L -1.4663
18 S L -0.9572
19 I L -0.2433
20 T L -0.0686
21 I L 0.0000
22 S L -0.2609
23 C L 0.0000
24 T L -0.4632
25 G L -0.2695
26 T L -0.1973
27 S L 0.0698
28 S L 0.5740
29 D L 0.0000
30 V L 0.0000
31 G L 0.1094
35 F L 1.5570
36 Y L 0.4474
37 N L -0.3399
38 Y L 0.2207
39 V L 0.0000
40 S L 0.0000
41 W L 0.0000
42 Y L 0.0000
43 Q L -1.3804
44 Q L 0.0000
45 H L -2.0343
46 P L -1.3281
47 G L -1.5931
48 K L -2.5523
49 A L -1.6884
50 P L 0.0000
51 E L -2.1064
52 L L 0.0000
53 M L 0.0000
54 I L 0.0000
55 Y L -0.1231
56 D L 0.0000
57 V L 0.0000
65 S L -0.8044
66 N L -0.8791
67 R L -1.4229
68 P L -0.6786
69 S L -0.6330
70 G L -0.8196
71 V L -0.9906
72 S L -1.2108
74 D L -2.1395
75 R L -1.3460
76 F L 0.0000
77 S L -0.9441
78 G L -0.5689
79 S L -0.7225
80 K L -0.9836
83 S L -0.8218
84 G L -0.7248
85 N L -0.6849
86 T L -0.7603
87 A L 0.0000
88 S L -0.3715
89 L L 0.0000
90 T L -0.2248
91 I L 0.0000
92 S L -1.0861
93 G L -1.1288
94 L L 0.0000
95 Q L -1.5411
96 A L -1.1367
97 E L -2.2557
98 D L 0.0000
99 E L -1.7902
100 A L 0.0000
101 D L -1.5512
102 Y L 0.0000
103 Y L 0.0000
104 C L 0.0000
105 S L 0.0000
106 S L 0.0000
107 Y L 0.6306
108 T L 0.0000
109 S L 1.0644
113 I L 1.8543
114 S L 1.0074
115 T L 0.0000
116 W L 0.0000
117 V L 0.0000
118 F L 0.0000
119 G L 0.0000
120 G L -0.9045
121 G L 0.0000
122 T L 0.0000
123 K L -1.3470
124 L L 0.0000
125 T L -0.2663
126 V L 0.1583
127 L L 1.3543
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Laboratory of Theory of Biopolymers 2018