Project name: GAP43 (cryptic)

Status: done

Started: 2026-07-03 10:43:12
Settings
Chain sequence(s) A: MLCCMRRTKQVEKNDDDQKIEQDGIKPEDKAHKAATKIQASFRGHITRKKLKGEKKDDVQAAEAEANKKDEAPVADGVEKKGEGTTTAEAAPATGSKPDEPGKAGETPSEEKKGEGDAATEQAAPQAPASSEEKAGSAETESATKASTDNSPSSKAEDAPAKEEPKQADVPAAVTAAAATTPAAEDAAAKATAQPPTETGESSQAEENIGSKYGLNHRVLLGRKPTP
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:02:13)
[INFO]       Main:     Simulation completed successfully.                                          (00:02:15)
Show buried residues

Minimal score value
-5.3909
Maximal score value
2.6254
Average score
-1.6649
Total score value
-377.9343

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A 2.3025
2 L A 2.6254
3 C A 1.8353
4 C A 1.3189
5 M A 0.5724
6 R A -1.8941
7 R A -2.7074
8 T A -2.2424
9 K A -2.7679
10 Q A -2.3002
11 V A -0.9113
12 E A -3.3031
13 K A -4.0841
14 N A -4.5976
15 D A -5.3909
16 D A -5.0541
17 D A -4.6664
18 Q A -4.0671
19 K A -3.4746
20 I A -1.7038
21 E A -3.0262
22 Q A -2.8322
23 D A -2.5963
24 G A -1.4655
25 I A -0.0307
26 K A -2.5804
27 P A -3.0295
28 E A -3.9942
29 D A -4.4952
30 K A -4.0047
31 A A -3.2691
32 H A -3.3913
33 K A -3.6301
34 A A -1.9238
35 A A -1.3088
36 T A -1.3142
37 K A -1.4711
38 I A 0.6621
39 Q A -0.5094
40 A A -0.5488
41 S A 0.0217
42 F A 0.5813
43 R A -1.5143
44 G A -1.3993
45 H A -1.8653
46 I A -1.3764
47 T A -2.0128
48 R A -3.1841
49 K A -3.5409
50 K A -3.0057
51 L A -1.6984
52 K A -3.9640
53 G A -4.2474
54 E A -4.0856
55 K A -4.1550
56 K A -4.3844
57 D A -4.1920
58 D A -2.5626
59 V A -0.5593
60 Q A -1.3784
61 A A -0.8205
62 A A -1.2993
63 E A -2.2375
64 A A -2.1571
65 E A -2.7187
66 A A -2.4494
67 N A -3.1962
68 K A -3.7339
69 K A -4.1654
70 D A -4.0980
71 E A -2.9024
72 A A -1.1107
73 P A 0.0288
74 V A 0.9750
75 A A 0.0576
76 D A -1.2244
77 G A -0.6556
78 V A -0.1014
79 E A -2.2848
80 K A -3.2566
81 K A -3.7147
82 G A -2.7755
83 E A -2.7177
84 G A -1.7559
85 T A -0.7531
86 T A -0.2371
87 T A -0.4588
88 A A -0.8886
89 E A -1.7628
90 A A -0.8523
91 A A -0.4286
92 P A -0.2034
93 A A -0.1892
94 T A -0.3702
95 G A -0.9355
96 S A -1.3471
97 K A -2.3482
98 P A -2.3355
99 D A -3.1658
100 E A -2.9699
101 P A -2.1027
102 G A -1.7947
103 K A -2.0476
104 A A -1.4941
105 G A -1.6637
106 E A -2.1153
107 T A -1.1961
108 P A -1.1096
109 S A -1.6376
110 E A -3.2716
111 E A -4.0242
112 K A -3.9841
113 K A -3.5479
114 G A -2.7029
115 E A -3.0523
116 G A -2.3588
117 D A -2.3888
118 A A -0.9292
119 A A -0.7301
120 T A -1.2456
121 E A -2.4600
122 Q A -2.1248
123 A A -0.9652
124 A A -0.4960
125 P A -0.7808
126 Q A -1.3376
127 A A -0.6900
128 P A -0.5034
129 A A -0.2110
130 S A -0.7300
131 S A -1.6167
132 E A -3.2517
133 E A -3.6608
134 K A -3.0897
135 A A -1.4687
136 G A -0.8913
137 S A -0.7649
138 A A -1.0639
139 E A -2.2454
140 T A -1.9484
141 E A -2.3275
142 S A -1.3089
143 A A -0.9138
144 T A -0.9072
145 K A -1.7711
146 A A -0.9237
147 S A -0.9903
148 T A -1.4936
149 D A -2.5458
150 N A -2.3562
151 S A -1.5128
152 P A -0.9491
153 S A -1.0384
154 S A -1.4487
155 K A -2.4639
156 A A -2.1066
157 E A -3.0881
158 D A -2.9121
159 A A -1.3352
160 P A -0.9402
161 A A -1.5180
162 K A -3.0924
163 E A -3.6746
164 E A -3.6039
165 P A -2.7035
166 K A -2.8230
167 Q A -2.5049
168 A A -1.5321
169 D A -1.1631
170 V A 0.7711
171 P A 0.2794
172 A A 0.6804
173 A A 0.9375
174 V A 1.7913
175 T A 0.8888
176 A A 0.4287
177 A A 0.1150
178 A A 0.1150
179 A A 0.0496
180 T A -0.1165
181 T A -0.2063
182 P A -0.2633
183 A A -0.4226
184 A A -1.2938
185 E A -2.6929
186 D A -2.6762
187 A A -1.1801
188 A A -0.6305
189 A A -0.7287
190 K A -1.6458
191 A A -0.9186
192 T A -0.7373
193 A A -0.6431
194 Q A -1.3736
195 P A -1.1725
196 P A -1.2271
197 T A -1.3559
198 E A -2.3280
199 T A -1.6830
200 G A -1.9725
201 E A -2.4283
202 S A -1.6108
203 S A -1.5383
204 Q A -2.0809
205 A A -2.1618
206 E A -3.2189
207 E A -3.0157
208 N A -2.2349
209 I A 0.1127
210 G A -0.6471
211 S A -1.0811
212 K A -0.9749
213 Y A 0.6567
214 G A -0.1701
215 L A 0.1576
216 N A -1.4140
217 H A -1.2657
218 R A -1.0600
219 V A 1.3802
220 L A 1.7313
221 L A 1.6476
222 G A -0.4365
223 R A -2.3486
224 K A -2.4843
225 P A -1.6734
226 T A -1.0129
227 P A -0.5516
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Laboratory of Theory of Biopolymers 2018