Project name: query_structure

Status: done

Started: 2026-03-16 23:27:19
Settings
Chain sequence(s) A: GLVPCGETCFTGKCYTPGCSCSYPICKKN
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:16)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:17)
Show buried residues

Minimal score value
-1.4538
Maximal score value
1.8075
Average score
0.1571
Total score value
4.5546

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 G A -0.0693
2 L A 1.5296
3 V A 1.6368
4 P A 0.3993
5 C A -0.0996
6 G A -0.5556
7 E A -0.4053
8 T A 0.4213
9 C A 0.0000
10 F A 1.8075
11 T A 0.4407
12 G A -0.2455
13 K A -0.9731
14 C A 0.0000
15 Y A 0.7491
16 T A -0.0439
17 P A -0.2495
18 G A -1.0062
19 C A -0.8764
20 S A -0.5827
21 C A 0.5227
22 S A 0.9450
23 Y A 1.7017
24 P A 1.3404
25 I A 0.8303
26 C A 0.0000
27 K A -0.1701
28 K A -1.0388
29 N A -1.4538
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Laboratory of Theory of Biopolymers 2018