Project name: query_structure

Status: done

Started: 2026-03-16 20:33:20
Settings
Chain sequence(s) A: LPAPKNLVVSRVTEDSARLSWTAPDAAFDSFAIAYPEWPPQGEAIVLTVPGSCRSYDLTGLKPGTEYFVVIYGVKGGSYSAPLSATFTT
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:34)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:35)
Show buried residues

Minimal score value
-2.9679
Maximal score value
2.2761
Average score
-0.5291
Total score value
-47.0907

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 L A 1.3578
2 P A 0.3286
3 A A -0.0120
4 P A 0.0000
5 K A -1.8732
6 N A -1.4268
7 L A -0.1063
8 V A 1.0518
9 V A 0.3754
10 S A -0.5900
11 R A -2.0105
12 V A -0.9892
13 T A -1.7424
14 E A -2.9679
15 D A -2.6235
16 S A -2.0278
17 A A 0.0000
18 R A -1.2028
19 L A 0.0000
20 S A -0.1975
21 W A 0.0000
22 T A -1.1120
23 A A -1.2531
24 P A -1.3824
25 D A -2.1441
26 A A -1.4236
27 A A -1.0117
28 F A 0.0000
29 D A -2.4885
30 S A -1.0670
31 F A 0.0000
32 A A 0.0000
33 I A 0.0000
34 A A 0.0000
35 Y A 0.9130
36 P A 0.0429
37 E A -0.8465
38 W A 0.2636
39 P A -0.2738
40 P A -1.1476
41 Q A -1.8322
42 G A -1.8058
43 E A -1.7905
44 A A -0.0674
45 I A 1.5937
46 V A 2.2761
47 L A 1.3543
48 T A 0.4076
49 V A 0.0000
50 P A -0.7747
51 G A 0.0000
52 S A -1.0629
53 C A -0.3969
54 R A -0.6420
55 S A -0.3098
56 Y A -0.5246
57 D A -1.6872
58 L A 0.0000
59 T A -1.4068
60 G A -1.4595
61 L A 0.0000
62 K A -2.9078
63 P A -2.4389
64 G A -1.7397
65 T A -1.5087
66 E A -0.8760
67 Y A 0.0000
68 F A 0.5977
69 V A 0.0000
70 V A 0.6119
71 I A 0.0000
72 Y A 0.7095
73 G A 0.0000
74 V A -0.2564
75 K A -1.2440
76 G A -1.2834
77 G A -0.9115
78 S A 0.0079
79 Y A 1.2673
80 S A 0.0000
81 A A 0.6055
82 P A 0.0171
83 L A -0.2870
84 S A 0.0859
85 A A 0.4460
86 T A 0.3402
87 F A 0.0000
88 T A -0.8215
89 T A -1.7891
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Laboratory of Theory of Biopolymers 2018