Project name: Kajal

Status: done

Started: 2024-12-28 14:13:14
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Chain sequence(s) A: MDVTIQHPWFKRTLGPFYPSRLFDQFFGEGLFEYDLLPFLSSTISPYYRQSLFRTVLDSGISEVRSDRDKFVIFLDVKHFSPEDLTVKVQDDFVEIHGKHNERQDDHGYISREFHRRYRLPSNVDQSALSCSLSADGMLTFCGPKIQTGLDATHAERAIPVSREEK
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:14)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:15)
Show buried residues

Minimal score value
-3.8175
Maximal score value
1.3586
Average score
-1.4045
Total score value
-148.8821

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
61 I A 1.3586
62 S A -0.1528
63 E A -1.7685
64 V A -0.9485
65 R A -2.2456
66 S A -2.4300
67 D A -3.8175
68 R A -3.5266
69 D A -3.2249
70 K A -2.4934
71 F A -1.5171
72 V A 0.0000
73 I A 0.0000
74 F A -0.7840
75 L A 0.0000
76 D A -1.6632
77 V A 0.0000
78 K A -2.4188
79 H A -2.0848
80 F A 0.0000
81 S A -1.3192
82 P A 0.0000
83 E A -2.4863
84 D A -2.2145
85 L A 0.0000
86 T A -1.0370
87 V A 0.0000
88 K A -1.7993
89 V A 0.0000
90 Q A -3.1652
91 D A -3.3574
92 D A -3.5217
93 F A -2.7968
94 V A 0.0000
95 E A 0.0000
96 I A 0.0000
97 H A -1.6874
98 G A 0.0000
99 K A -3.5354
100 H A -3.1126
101 N A -2.9359
102 E A -2.5217
103 R A -2.7290
104 Q A -2.9256
105 D A -3.1141
106 D A -3.2258
107 H A -2.3366
108 G A -1.5199
109 Y A -0.5439
110 I A -0.7647
111 S A -2.2141
112 R A -3.2308
113 E A -3.1469
114 F A -1.7131
115 H A -1.9403
116 R A -1.6599
117 R A -2.5554
118 Y A -1.6536
119 R A -2.6825
120 L A 0.0000
121 P A -1.3027
122 S A -1.2823
123 N A -1.0746
124 V A 0.0000
125 D A -0.8996
126 Q A 0.0000
127 S A -0.8527
128 A A -0.3447
129 L A 0.0000
130 S A -0.7270
131 C A 0.0000
132 S A 0.0000
133 L A -1.5462
134 S A -1.4239
135 A A -1.1544
136 D A -2.3676
137 G A -1.7080
138 M A -1.5014
139 L A 0.0000
140 T A 0.0000
141 F A 0.0000
142 C A -0.2150
143 G A 0.0000
144 P A -0.8046
145 K A 0.0000
146 I A 0.2938
147 Q A -1.0309
148 T A -1.5460
149 G A -0.4820
150 L A -0.0425
151 D A -1.4536
152 A A -0.9516
153 T A -0.7899
154 H A -1.4454
155 A A -1.9832
156 E A -3.2782
157 R A -2.1106
158 A A -1.1830
159 I A 0.0000
160 P A -0.7716
161 V A -1.1111
162 S A -1.6268
163 R A -2.9805
164 E A -2.6150
165 E A -2.7449
166 K A -2.6607
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Laboratory of Theory of Biopolymers 2018