Project name: VHH2_5

Status: done

Started: 2024-06-10 13:15:07
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Chain sequence(s) H: QVQLQESGGGLAQPGGSLRLSCAANRTIGNYYVMGWYRQTPGNQRDLVAVITSGGRTNYTDSVKGRFTISRDNAKNTVDLQMNSLKSEDTAVYYCNLKNLWGTYWGPGTQVTVSS
input PDB
Selected Chain(s) H
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with H chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:32)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:33)
Show buried residues

Minimal score value
-2.9229
Maximal score value
1.5694
Average score
-0.882
Total score value
-101.4297

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q H -1.7665
2 V H 0.0000
3 Q H -2.1248
4 L H 0.0000
5 Q H -1.6985
6 E H -1.0858
7 S H -1.2115
8 G H -1.3108
9 G H -0.7261
11 G H 0.0430
12 L H 1.0196
13 A H -0.2674
14 Q H -1.5072
15 P H -1.9254
16 G H -1.5395
17 G H -1.2597
18 S H -1.3036
19 L H -1.0156
20 R H -2.2528
21 L H 0.0000
22 S H -1.2080
23 C H 0.0000
24 A H -1.6022
25 A H 0.0000
26 N H -2.8490
27 R H -2.9229
28 T H -1.7829
29 I H 0.0000
30 G H -1.4649
35 N H -1.0834
36 Y H 0.0000
37 Y H 1.1125
38 V H 0.3191
39 M H 0.0000
40 G H 0.0000
41 W H 0.0000
42 Y H -0.0399
43 R H -0.9932
44 Q H -1.6794
45 T H -1.6539
46 P H -1.1241
47 G H -1.5696
48 N H -2.6529
49 Q H -2.7591
50 R H -2.2297
51 D H -2.2367
52 L H -0.3240
53 V H 0.0000
54 A H 0.0000
55 V H -0.1064
56 I H 0.0000
57 T H -0.5765
58 S H -0.9548
59 G H -1.2114
63 G H -1.8410
64 R H -2.3455
65 T H -1.4280
66 N H -1.5503
67 Y H -1.1530
68 T H -1.5409
69 D H -2.6779
70 S H -1.9847
71 V H 0.0000
72 K H -2.8222
74 G H -1.7859
75 R H -1.7176
76 F H 0.0000
77 T H -1.0211
78 I H 0.0000
79 S H -0.9671
80 R H -1.4256
81 D H -1.9554
82 N H -2.3574
83 A H -1.6788
84 K H -2.5374
85 N H -2.4173
86 T H -1.6538
87 V H 0.0000
88 D H -1.2712
89 L H 0.0000
90 Q H -1.3544
91 M H 0.0000
92 N H -1.4029
93 S H -1.3422
94 L H 0.0000
95 K H -2.4974
96 S H -1.9869
97 E H -2.3843
98 D H 0.0000
99 T H -0.8565
100 A H 0.0000
101 V H -0.1391
102 Y H 0.0000
103 Y H -0.1829
104 C H 0.0000
105 N H 0.0000
106 L H 0.0000
107 K H 0.3081
108 N H 0.3112
109 L H 1.5530
114 W H 1.5694
115 G H 0.1931
116 T H 0.1418
117 Y H -0.1692
118 W H 0.2353
119 G H 0.0000
120 P H -0.5261
121 G H -0.4612
122 T H -0.7206
123 Q H -0.6188
124 V H 0.0000
125 T H -0.2598
126 V H 0.0000
127 S H -0.6151
128 S H -0.5662
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Laboratory of Theory of Biopolymers 2018