| Chain sequence(s) |
A: DVVMTQTPLSLSVTPGEPASISCRSTQSLLDGVNPSFDWYVQKPGQSPQLLIHRGFYRASGVPDRFSGSGSGTDFTLRISRVEAEDVGVYYCMQRIEFPLTFGGGTKVEIK
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:54)
[INFO] Main: Simulation completed successfully. (00:00:55)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | D | A | -1.1150 | |
| 2 | V | A | 0.6368 | |
| 3 | V | A | 1.4526 | |
| 4 | M | A | 0.6321 | |
| 5 | T | A | -0.1222 | |
| 6 | Q | A | -0.0508 | |
| 7 | T | A | 0.0145 | |
| 8 | P | A | 0.6530 | |
| 9 | L | A | 1.7933 | |
| 10 | S | A | 1.1372 | |
| 11 | L | A | 1.4365 | |
| 12 | S | A | 0.5944 | |
| 13 | V | A | 0.0258 | |
| 14 | T | A | -0.8032 | |
| 15 | P | A | -1.7397 | |
| 16 | G | A | -1.9990 | |
| 17 | E | A | -2.3506 | |
| 18 | P | A | -2.1160 | |
| 19 | A | A | -1.0696 | |
| 20 | S | A | -0.6679 | |
| 21 | I | A | 0.0000 | |
| 22 | S | A | -0.7916 | |
| 23 | C | A | 0.0000 | |
| 24 | R | A | -1.9874 | |
| 25 | S | A | 0.0000 | |
| 26 | T | A | 0.1884 | |
| 27 | Q | A | 0.4329 | |
| 28 | S | A | 0.7069 | |
| 29 | L | A | 1.5909 | |
| 30 | L | A | 1.2799 | |
| 31 | D | A | -0.5726 | |
| 34 | G | A | 0.2500 | |
| 35 | V | A | 0.1323 | |
| 36 | N | A | -1.2276 | |
| 37 | P | A | -1.1604 | |
| 38 | S | A | -1.4987 | |
| 39 | F | A | 0.0000 | |
| 40 | D | A | 0.0000 | |
| 41 | W | A | 0.0000 | |
| 42 | Y | A | 0.4472 | |
| 43 | V | A | 0.0000 | |
| 44 | Q | A | -0.3556 | |
| 45 | K | A | -0.9516 | |
| 46 | P | A | -0.8963 | |
| 47 | G | A | -1.4188 | |
| 48 | Q | A | -2.0074 | |
| 49 | S | A | -1.3863 | |
| 50 | P | A | -0.9271 | |
| 51 | Q | A | -0.9746 | |
| 52 | L | A | -0.2294 | |
| 53 | L | A | 0.0000 | |
| 54 | I | A | 0.0000 | |
| 55 | H | A | -0.2877 | |
| 56 | R | A | -1.0141 | |
| 57 | G | A | 0.0000 | |
| 65 | F | A | 1.6076 | |
| 66 | Y | A | 1.1151 | |
| 67 | R | A | -0.7885 | |
| 68 | A | A | -0.5756 | |
| 69 | S | A | -0.7248 | |
| 70 | G | A | -1.0091 | |
| 71 | V | A | 0.0000 | |
| 72 | P | A | -1.4070 | |
| 74 | D | A | -2.3364 | |
| 75 | R | A | -2.2730 | |
| 76 | F | A | 0.0000 | |
| 77 | S | A | -0.7471 | |
| 78 | G | A | -0.0408 | |
| 79 | S | A | 0.0185 | |
| 80 | G | A | -0.5117 | |
| 83 | S | A | -0.9413 | |
| 84 | G | A | -1.0654 | |
| 85 | T | A | -1.2248 | |
| 86 | D | A | -1.7069 | |
| 87 | F | A | 0.0000 | |
| 88 | T | A | -0.7004 | |
| 89 | L | A | 0.0000 | |
| 90 | R | A | -1.7101 | |
| 91 | I | A | 0.0000 | |
| 92 | S | A | -2.3352 | |
| 93 | R | A | -3.0844 | |
| 94 | V | A | -2.2070 | |
| 95 | E | A | -2.4017 | |
| 96 | A | A | -1.0861 | |
| 97 | E | A | -1.7926 | |
| 98 | D | A | 0.0000 | |
| 99 | V | A | 1.2735 | |
| 100 | G | A | 1.0030 | |
| 101 | V | A | 2.1444 | |
| 102 | Y | A | 1.4447 | |
| 103 | Y | A | 1.3226 | |
| 104 | C | A | 0.4022 | |
| 105 | M | A | 0.0251 | |
| 106 | Q | A | -0.9670 | |
| 107 | R | A | -2.0822 | |
| 108 | I | A | -0.8041 | |
| 109 | E | A | -1.1380 | |
| 114 | F | A | 0.8771 | |
| 115 | P | A | 0.9404 | |
| 116 | L | A | 2.1641 | |
| 117 | T | A | 1.6871 | |
| 118 | F | A | 1.8546 | |
| 119 | G | A | 0.0915 | |
| 120 | G | A | -0.6467 | |
| 121 | G | A | -0.7672 | |
| 122 | T | A | -1.0225 | |
| 123 | K | A | -1.4928 | |
| 124 | V | A | 0.4260 | |
| 125 | E | A | -0.7740 | |
| 126 | I | A | 0.6798 | |
| 127 | K | A | -1.1091 |